Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2l23
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798     30   1.7  
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820...    29   2.9  
01_06_1171 - 35089719-35090336,35090596-35090715,35090851-350911...    29   5.1  
12_01_1009 - 10253409-10255033,10255301-10255610,10255707-102563...    28   6.7  
03_05_0883 + 28483429-28484385,28485090-28485398                       28   6.7  
02_05_0331 + 28003454-28003912,28004649-28004873,28005017-280053...    28   8.8  
01_01_0840 - 6557931-6558377                                           28   8.8  

>03_02_0770 + 11038971-11039392,11040071-11040353,11040697-11040798
          Length = 268

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -1

Query: 193 DADTGVASVTFSASGFTFLSSVLVSTAEVVF 101
           DAD GVA+V  +  G  F S V ++ AE VF
Sbjct: 53  DADDGVAAVVLAGRGRAFCSGVDLTAAEEVF 83


>01_06_1201 -
           35380338-35380496,35381200-35381322,35381521-35382066,
           35382285-35382392,35382695-35383225,35383614-35383743,
           35384225-35385081,35385303-35385408,35387119-35387230,
           35389255-35389347,35389723-35389771,35389859-35389897,
           35390671-35390757,35391613-35391873,35391957-35392166,
           35392413-35393507
          Length = 1501

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = -1

Query: 532 NPIAKRPRVSMIPPTKL-GPSNALACTVGSMCVGASVDLASSDFGVVASSFLASVEELVS 356
           NP A R  + ++PP  L  P+ A A + G +CV A+   +  DF ++  S  A+   L S
Sbjct: 787 NPGACR-FIPLLPPKPLLSPAAAAASSRGGLCVAAA---SRRDFLLLVPSIAAASTVLQS 842

Query: 355 LFLAAS 338
           L L+AS
Sbjct: 843 LPLSAS 848


>01_06_1171 -
           35089719-35090336,35090596-35090715,35090851-35091108,
           35091934-35092563
          Length = 541

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -1

Query: 451 GSMCVGASVDLASSDFGVVASSFLASVEELVSLFLAASVWCSGTILVGSETG 296
           G  CVG + +   S+  V A++      E   L   ++VWC G +L+   TG
Sbjct: 319 GYGCVGFNTEEEISNASVAAANLSVETLEKGVLTPKSNVWCFGVVLLELITG 370


>12_01_1009 -
           10253409-10255033,10255301-10255610,10255707-10256312,
           10256359-10256487
          Length = 889

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 553 RTTLKETTIHYKFHL--E*SAPIYCKNLCFSILFSECTTT 666
           RT + E  +H   HL    S PI CK L   ++ S  TTT
Sbjct: 466 RTIVSEDIVHSLLHLISNTSPPIQCKLLEIFVMLSSSTTT 505


>03_05_0883 + 28483429-28484385,28485090-28485398
          Length = 421

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -1

Query: 535 MNPIAKRPRVSMIPPTKLGPSNALACTVGSMCVGASVDLASSDFGVVASS 386
           ++ + +RPR     P   G  +A A TV +    A  DL + + G+V  +
Sbjct: 92  LHGLKRRPRTPRTKPGGGGKHDASAATVAAAAASAVPDLEAEESGIVGDT 141


>02_05_0331 +
           28003454-28003912,28004649-28004873,28005017-28005370,
           28005673-28005702,28006869-28007342
          Length = 513

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 514 PRVSMIPPTKLGPSNALACTVGSMCVGASVDLASSDFGVVA 392
           PR   +P   L  S  L    G++CVGA+  L   D G  A
Sbjct: 82  PRAPPVPRRALAAS--LLAAAGALCVGAAASLVPEDSGWAA 120


>01_01_0840 - 6557931-6558377
          Length = 148

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -1

Query: 505 SMIPPTKLGPSNALACTVGSMCVGASVDLASSDFG 401
           SM PP    PS+ L C V      ++ DLASS  G
Sbjct: 19  SMPPPLLCLPSSPLPCVVEVAMTSSTPDLASSSTG 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,981,902
Number of Sequences: 37544
Number of extensions: 273784
Number of successful extensions: 691
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)