Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2l22
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    28   1.1  
SPBC577.15c |||NASP family histone binding protein|Schizosacchar...    28   1.5  
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    27   2.0  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    27   3.4  
SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.0  
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom...    26   6.0  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    25   7.9  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 375 FGGVTSCRKVSYTSSESFEKNRNGWSDTPSVTVELRGKNTRFNLSDNFIRLLCQNTKS 548
           +G + +   +  + S  FE     WS TPS T   + KN  F +  N   L+  +T S
Sbjct: 562 YGNMVNDSSIESSDSFVFENTSLSWSPTPS-TALFQLKNLNFTIPRNQFTLVVGSTGS 618


>SPBC577.15c |||NASP family histone binding
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
 Frame = +3

Query: 174 HRKQNSLKDKHVKGKESASAACET---QVCRESLEEC------LKN----FDKNVLAEMR 314
           + ++N + DK  KGK+ A  +  T   +  RE L E       LK+     ++ V+++M 
Sbjct: 282 NERENEVTDKKGKGKQKAEESTLTSDLENLREMLSELEQKTLDLKHGAPSLEEAVMSKMH 341

Query: 315 -----SVDLRSLATIAASSRRSLNDFGGVTSCRKVSYTSSESFEK 434
                S D  SLA   A + ++ ND GG+   ++     + S +K
Sbjct: 342 ESSLLSKDSSSLAQAVAEAVKNANDLGGLVKRKRTKQEVTSSSQK 386


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +1

Query: 370 TILAVLHLVEKCLTLQVNLLRKTGMVGVILLVLQWSYE 483
           T+   ++L+++ L+++V  L+K  +VG+  L++   YE
Sbjct: 216 TLFLAVNLIDRFLSIKVVSLQKVQLVGLSALLIACKYE 253


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 370 TILAVLHLVEKCLTLQVNLLRKTGMVGVILLVLQWSYE 483
           T+   ++++++ L+L+V  L K  +VG+  L +   YE
Sbjct: 256 TLFLAVNIIDRFLSLRVCSLNKLQLVGIAALFIASKYE 293


>SPBC21C3.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 186

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 291 YRNSSNTLLSSRGKLESRMQHW 226
           Y +S+NTL++S G + S   +W
Sbjct: 58  YADSNNTLITSSGVIPSNQTYW 79


>SPAC1834.07 |klp3|krp1|kinesin-like protein
           Klp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 29/131 (22%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
 Frame = +3

Query: 282 NFDK---NVLAEMRSVDLRSLATIAASSRRSLNDFG---GVTSCRKVSYTSSESFEKN-- 437
           NFD    N L     ++L+    + +S+++ L+D     G    R V    +     N  
Sbjct: 422 NFDSDSINRLYAEAQLELKQRDGVLSSTKQQLSDLMTALGDAQERYVELVKNHRVNSNLT 481

Query: 438 -RNGWSDTPSVTVELRGKNTRFNLS-DNFIRLLCQNTKSTFKYNIQVRGFKTDRSISADL 611
             N  +D P  T+E + KN   N   +NF++ L     S+    + V+       IS + 
Sbjct: 482 ANNSLNDKPGFTIEQKDKNFSINNERNNFLQKL-STLDSSLAALVNVQRKLIKALISKER 540

Query: 612 KRNPNLVNRLR 644
            +N  ++ +++
Sbjct: 541 PQNGTVIKKIQ 551


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
 Frame = +3

Query: 189 SLKDKHVKGKESASAACETQVCRESLEECLKNFDKNVL----AEMRSVDL-RSLATIAAS 353
           SLK  ++  K+    A   ++C+E  E+CLK  D+  +     E R+ DL + L +   S
Sbjct: 67  SLKKDNLFSKDGLLYAYY-ELCQEKFEKCLKEDDEEWIELWDLESRTWDLIQRLYSFRLS 125

Query: 354 SRR---SLNDFGGVTSCRKVSYTSS-ESFEKN------RNGWSDTPSVTVELRGKNTRFN 503
            ++     + F       +  Y+ + E+FE N      R+  SD PS  +E+RG    + 
Sbjct: 126 EQQGHIQSHAFSSRAVLEEEYYSQNPEAFENNIVFNWARDNSSDPPS--IEIRGNRWFYT 183

Query: 504 LSD 512
             D
Sbjct: 184 RED 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,136
Number of Sequences: 5004
Number of extensions: 54049
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)