Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2l20
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0511 + 18435745-18436499,18436624-18436742,18436788-184373...    28   8.1  
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615...    28   8.1  
07_03_1654 - 28416487-28416548,28416791-28416824,28418156-284182...    28   8.1  
03_02_0736 + 10818544-10818681,10818810-10818865,10818956-108190...    28   8.1  

>10_08_0511 +
           18435745-18436499,18436624-18436742,18436788-18437372,
           18438534-18438667,18439128-18439148,18439656-18439739,
           18439832-18440077,18440763-18440925,18441024-18441066,
           18441392-18441773,18442212-18442267,18442351-18442417,
           18442542-18442721
          Length = 944

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +3

Query: 390 ETGSMLESTSHATVRHSI-KFDYVDELIQMLKDPLNYGLFLDDYSANILLNELLVKKNYT 566
           E+G+ +E +++  + H + K    D+ +QM ++     L L+  + NI+++ LL      
Sbjct: 361 ESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRND 420

Query: 567 QAADI 581
           +A D+
Sbjct: 421 EAKDL 425


>08_02_1143 + 24659105-24659386,24660171-24660272,24661259-24661521,
            24661775-24661874,24662080-24662238,24662327-24663147,
            24663299-24663618,24665831-24667398
          Length = 1204

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 420  HATVRHSIKFDYVDELIQMLKDPLNYGLFLDDYSANILL 536
            +AT++  ++    DE++Q+ +    YG+ LDD S N ++
Sbjct: 946  NATMKVLLRARLFDEVLQLFESSETYGVELDDISYNTVV 984


>07_03_1654 -
           28416487-28416548,28416791-28416824,28418156-28418212,
           28418401-28418450,28418968-28419025,28419136-28419182,
           28419278-28419377,28419446-28419586,28419715-28419780,
           28420024-28420118,28420440-28420629
          Length = 299

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 183 YNHY*EMSFFLEKLTKNSLLVLSEHFLTFFNKILSSCSIFKYFNEIIKRLMC 28
           Y +Y +M + + KL  +        F   + +I S  S+ KYF ++   LMC
Sbjct: 240 YTNYDDMKYAIRKLDDSEF---KNAFSKAYIRITSKISVSKYFCQVRMMLMC 288


>03_02_0736 +
           10818544-10818681,10818810-10818865,10818956-10819050,
           10819172-10819203,10819327-10819360,10819463-10819674
          Length = 188

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 147 SLKKRTFLSNDYKCNENWNSAISSPLLNKI 236
           SL+ RTFL       +NW   +  PLLN++
Sbjct: 8   SLETRTFLDEVRGLEKNWMVDLGHPLLNRV 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,353,849
Number of Sequences: 37544
Number of extensions: 207742
Number of successful extensions: 463
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)