Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2l17
         (292 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1429 + 27040293-27040523,27041618-27041739,27042290-270423...    28   1.4  
07_03_1706 + 28855669-28855801,28856013-28856044,28856158-288562...    28   1.4  
08_02_0175 + 13772394-13773094,13773329-13773860                       26   4.4  
08_01_0501 + 4345522-4345720,4346598-4347167,4347294-4347366,435...    26   4.4  
05_05_0270 - 23728986-23729267,23729575-23730120,23730207-237305...    26   4.4  
02_03_0056 - 14525491-14525833,14525882-14526125,14526447-145265...    26   5.8  

>08_02_1429 +
           27040293-27040523,27041618-27041739,27042290-27042392,
           27042530-27042620,27042851-27043023,27043379-27043467,
           27044212-27044319,27044408-27044498,27044708-27044797,
           27045587-27045658,27045756-27045849,27045940-27046087,
           27046961-27047222
          Length = 557

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 179 CRTLKCPSPFCISMISSIFVIRLPFDN*DVKSISVKFK*FFLQSFVLNSR 30
           C +L+CP P C +M+    + +L  D  D K   V++  F L+++V +S+
Sbjct: 195 CLSLRCPDPSCGAMVLQNMINKLAKD--DDK---VRYARFILRAYVEDSK 239


>07_03_1706 +
           28855669-28855801,28856013-28856044,28856158-28856229,
           28856631-28856727,28857195-28857256,28857726-28858024,
           28858306-28858663,28858692-28859297,28859500-28859698,
           28860039-28860101,28860603-28860673
          Length = 663

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 124 KIEDIIDMQKGEGHFNVRQVAF 189
           K+  I+DM + E HF+++Q AF
Sbjct: 260 KLRQILDMTEDEAHFHMKQSAF 281


>08_02_0175 + 13772394-13773094,13773329-13773860
          Length = 410

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 115 RITKIEDIIDMQKGEGHFNVRQ 180
           +IT+  DI+DMQ GE  +N+ +
Sbjct: 353 KITRRMDILDMQTGETQYNLTE 374


>08_01_0501 +
           4345522-4345720,4346598-4347167,4347294-4347366,
           4351133-4353092,4353465-4353840,4353932-4354326,
           4354597-4354765,4355444-4355518,4357699-4357826,
           4357988-4358213,4358290-4358417,4358505-4358768
          Length = 1520

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = +1

Query: 46  KLCKKNYLNLTDMDFTSQLSNGKRITKIEDIIDMQKGEG-HFNVRQVA-FHLPPENEQVS 219
           K+ + N L   D+ +T  L     I K+E + ++  G G  F  R +   H   E E+  
Sbjct: 619 KIGQLNCLETLDISYTEILELPLSIAKLECLANLYVGRGTRFPDRLIGKMHSLVELEEFG 678

Query: 220 SSACTEKSLESSIYKLKCRTSK 285
            S    KSL+      K RT K
Sbjct: 679 VSCELGKSLQGFSQLSKLRTLK 700


>05_05_0270 -
           23728986-23729267,23729575-23730120,23730207-23730561,
           23731147-23731442,23731665-23731714,23731802-23731904,
           23732059-23732148,23732328-23732384,23732571-23732618,
           23732725-23732753,23732940-23733087
          Length = 667

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 124 KIEDIIDMQKGEGHFNVRQVAF 189
           K+  ++DM + E HF+ RQ A+
Sbjct: 302 KLRQLLDMTEDEAHFHARQGAY 323


>02_03_0056 -
           14525491-14525833,14525882-14526125,14526447-14526591,
           14526757-14527121,14527323-14527722
          Length = 498

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 118 ITKIEDIIDMQKGEGHFNVRQ 180
           IT+  D +DMQ GE H+N+ +
Sbjct: 433 ITRRMDTLDMQTGEIHYNLTE 453


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,262,808
Number of Sequences: 37544
Number of extensions: 98578
Number of successful extensions: 231
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 316296968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)