Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2l17
         (292 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3404|AAF46853.2| 2733|Drosophila melanogaster CG4554-PA...    28   1.7  
EF458626-1|ABO26063.1|  560|Drosophila melanogaster nicotinic ac...    27   2.9  
AJ554210-1|CAD86936.1|  542|Drosophila melanogaster nicotinic ac...    27   2.9  
AE014298-2836|AAS65409.1|  560|Drosophila melanogaster CG32538-P...    27   2.9  
AE014298-2835|AAF48950.3|  541|Drosophila melanogaster CG32538-P...    27   2.9  
AY058526-1|AAL13755.1| 1760|Drosophila melanogaster LD23292p pro...    27   3.9  
AE014134-1393|AAF52601.1| 1760|Drosophila melanogaster CG7586-PA...    27   3.9  

>AE013599-3404|AAF46853.2| 2733|Drosophila melanogaster CG4554-PA
            protein.
          Length = 2733

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 107  MVNVLQKLKISLICKRVKGILMYGKSLFIYPQKMNRFHLQPVLKKV 244
            MV +LQKL + L+   + GI M   +    P K  R   + +LKK+
Sbjct: 1740 MVKLLQKLPLELLENSLPGIFMKVCTFLRSPLKSVRMLTRDILKKI 1785


>EF458626-1|ABO26063.1|  560|Drosophila melanogaster nicotinic
           acetylcholine receptorDalpha7 protein.
          Length = 560

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 178 QVAFHLPPENEQVSSSACTEKSLESSIYKLKCRTSK 285
           QV +  PP     SSSA  EK  +    +LK R+SK
Sbjct: 388 QVGYECPPPPSSSSSSASGEKKQQIQNVELKERSSK 423


>AJ554210-1|CAD86936.1|  542|Drosophila melanogaster nicotinic
           acetylcholine receptorsubunit Dalpha7 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 178 QVAFHLPPENEQVSSSACTEKSLESSIYKLKCRTSK 285
           QV +  PP     SSSA  EK  +    +LK R+SK
Sbjct: 366 QVGYECPPPPSSSSSSASGEKKQQIQNVELKERSSK 401


>AE014298-2836|AAS65409.1|  560|Drosophila melanogaster CG32538-PA,
           isoform A protein.
          Length = 560

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 178 QVAFHLPPENEQVSSSACTEKSLESSIYKLKCRTSK 285
           QV +  PP     SSSA  EK  +    +LK R+SK
Sbjct: 388 QVGYECPPPPSSSSSSASGEKKQQIQNVELKERSSK 423


>AE014298-2835|AAF48950.3|  541|Drosophila melanogaster CG32538-PB,
           isoform B protein.
          Length = 541

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 178 QVAFHLPPENEQVSSSACTEKSLESSIYKLKCRTSK 285
           QV +  PP     SSSA  EK  +    +LK R+SK
Sbjct: 369 QVGYECPPPPSSSSSSASGEKKQQIQNVELKERSSK 404


>AY058526-1|AAL13755.1| 1760|Drosophila melanogaster LD23292p
           protein.
          Length = 1760

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 18/82 (21%), Positives = 33/82 (40%)
 Frame = +1

Query: 37  FKTKLCKKNYLNLTDMDFTSQLSNGKRITKIEDIIDMQKGEGHFNVRQVAFHLPPENEQV 216
           ++ K+  +N LNL D        NG +  +++      +GE       +  H  P N+ +
Sbjct: 608 WEVKIDIRNDLNLDDRPQARDFLNGVQNMRLQANFVDPRGERIQTELLLVSHYSPRNQHI 667

Query: 217 SSSACTEKSLESSIYKLKCRTS 282
             +  TEK +         RT+
Sbjct: 668 KVTTSTEKPVVGEYIIFHIRTN 689


>AE014134-1393|AAF52601.1| 1760|Drosophila melanogaster CG7586-PA
           protein.
          Length = 1760

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 18/82 (21%), Positives = 33/82 (40%)
 Frame = +1

Query: 37  FKTKLCKKNYLNLTDMDFTSQLSNGKRITKIEDIIDMQKGEGHFNVRQVAFHLPPENEQV 216
           ++ K+  +N LNL D        NG +  +++      +GE       +  H  P N+ +
Sbjct: 608 WEVKIDIRNDLNLDDRPQARDFLNGVQNMRLQANFVDPRGERIQTELLLVSHYSPRNQHI 667

Query: 217 SSSACTEKSLESSIYKLKCRTS 282
             +  TEK +         RT+
Sbjct: 668 KVTTSTEKPVVGEYIIFHIRTN 689


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,918,393
Number of Sequences: 53049
Number of extensions: 180633
Number of successful extensions: 487
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 485663193
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)