Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2l17
(292 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL161712-3|CAC35908.1| 136|Caenorhabditis elegans Hypothetical ... 26 3.9
AF000299-6|AAC47978.1| 297|Caenorhabditis elegans Hypothetical ... 26 3.9
AC006723-1|AAF59429.3| 534|Caenorhabditis elegans Hypothetical ... 26 3.9
Z69646-8|CAA93477.3| 896|Caenorhabditis elegans Hypothetical pr... 26 5.2
Z50794-7|CAA90661.3| 896|Caenorhabditis elegans Hypothetical pr... 26 5.2
U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finge... 26 5.2
Z81527-14|CAB04278.2| 506|Caenorhabditis elegans Hypothetical p... 25 6.8
Z79753-8|CAB02089.2| 506|Caenorhabditis elegans Hypothetical pr... 25 6.8
L15314-6|AAF99987.1| 406|Caenorhabditis elegans Hypothetical pr... 25 6.8
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr... 25 9.1
U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin st... 25 9.1
U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin st... 25 9.1
L16685-8|AAO12393.1| 285|Caenorhabditis elegans Hypothetical pr... 25 9.1
L16685-7|AAO12394.1| 306|Caenorhabditis elegans Hypothetical pr... 25 9.1
AC006673-7|AAF39925.2| 332|Caenorhabditis elegans Serpentine re... 25 9.1
>AL161712-3|CAC35908.1| 136|Caenorhabditis elegans Hypothetical
protein Y66D12A.6 protein.
Length = 136
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 262 YKYWILNFFQYRLKMKPVHFLGVNEKR 182
YKYW L +M PVHF +NE R
Sbjct: 87 YKYWFLG---RENRMHPVHFEQLNELR 110
>AF000299-6|AAC47978.1| 297|Caenorhabditis elegans Hypothetical
protein E03H12.2 protein.
Length = 297
Score = 26.2 bits (55), Expect = 3.9
Identities = 8/31 (25%), Positives = 16/31 (51%)
Frame = -2
Query: 213 LFIFWG*MKSDLPYIKMPFTLLHINDIFNFC 121
+ +FWG S + + + T++H + N C
Sbjct: 1 MLLFWGYPASSIKFCEPQSTIIHFDSCINLC 31
>AC006723-1|AAF59429.3| 534|Caenorhabditis elegans Hypothetical
protein Y19D10B.2 protein.
Length = 534
Score = 26.2 bits (55), Expect = 3.9
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = +1
Query: 61 NYLNLTDMDFTSQLSNGKRITKIEDIIDMQKGEGHFNVR----QVAFHLPPENEQVSSSA 228
N NLTD +F L ++TK + I +Q N+ +V F LP ++ S
Sbjct: 163 NETNLTDFNFLENLKYVAQLTKDKSAIIVQNNPFLLNISFPKLKVRFELPTVDQFYYFSV 222
Query: 229 C 231
C
Sbjct: 223 C 223
>Z69646-8|CAA93477.3| 896|Caenorhabditis elegans Hypothetical protein
F59F5.7 protein.
Length = 896
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +2
Query: 89 LRLNYQMVNVLQKLKISLICKRVKGILMYGKSLFI-YPQ---KMNRFHLQPVLKKV*NP 253
L LN L+K KIS + + IL+Y K F+ Y + + HL P L + +P
Sbjct: 830 LILNGDSFLFLKKFKISYNVQELASILVYSKKRFVSYSEIYLPQSDMHLLPDLSSIASP 888
>Z50794-7|CAA90661.3| 896|Caenorhabditis elegans Hypothetical protein
F59F5.7 protein.
Length = 896
Score = 25.8 bits (54), Expect = 5.2
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +2
Query: 89 LRLNYQMVNVLQKLKISLICKRVKGILMYGKSLFI-YPQ---KMNRFHLQPVLKKV*NP 253
L LN L+K KIS + + IL+Y K F+ Y + + HL P L + +P
Sbjct: 830 LILNGDSFLFLKKFKISYNVQELASILVYSKKRFVSYSEIYLPQSDMHLLPDLSSIASP 888
>U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finger
b-box coiled coil)domain containing protein 2 protein.
Length = 1032
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 185 ATCRTLKCPSPFCISMISSIFV 120
+T R L CPS FC+S I +
Sbjct: 746 STIRELHCPSGFCLSDTDDILI 767
>Z81527-14|CAB04278.2| 506|Caenorhabditis elegans Hypothetical
protein F35E12.8 protein.
Length = 506
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 64 NFFCKVLF*IQDGFM 20
N+ CK+ F IQDGF+
Sbjct: 53 NYHCKIQFKIQDGFV 67
>Z79753-8|CAB02089.2| 506|Caenorhabditis elegans Hypothetical
protein F35E12.8 protein.
Length = 506
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -1
Query: 64 NFFCKVLF*IQDGFM 20
N+ CK+ F IQDGF+
Sbjct: 53 NYHCKIQFKIQDGFV 67
>L15314-6|AAF99987.1| 406|Caenorhabditis elegans Hypothetical
protein K06H7.2 protein.
Length = 406
Score = 25.4 bits (53), Expect = 6.8
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Frame = +1
Query: 34 EFKTKLCKKNYLNLTD---MDFTSQLSNGKRITKIEDIIDMQKGEGHFNVRQVAFHLPPE 204
E K K C N N+TD F NGK + ++ Q+ + + P
Sbjct: 268 ELKAKKCSFNSSNITDEAINKFIKNWINGKSVEGFKEAFLWQRSTSNTEEITKGIEIRPW 327
Query: 205 NEQ 213
NEQ
Sbjct: 328 NEQ 330
>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
protein.
Length = 1613
Score = 25.0 bits (52), Expect = 9.1
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 94 SQLSNGKRITKIED-IIDMQKGEGHFNVRQVAFHLPPENEQVSSSACTEKSLESSIYK 264
S++S RI ++D I +Q N+R A HL PE+EQ+ S E+ S YK
Sbjct: 52 SRISARARIQAVDDRYIHLQL----VNIRMAASHL-PESEQMPSLNSMEQRELSEEYK 104
>U56966-6|ABS19472.1| 1558|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
b protein.
Length = 1558
Score = 25.0 bits (52), Expect = 9.1
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 94 SQLSNGKRITKIED-IIDMQKGEGHFNVRQVAFHLPPENEQVSSSACTEKSLESSIYK 264
S++S RI ++D I +Q N+R A HL PE+EQ+ S E+ S YK
Sbjct: 52 SRISARARIQAVDDRYIHLQL----VNIRMAASHL-PESEQMPSLNSMEQRELSEEYK 104
>U56966-5|AAA98720.1| 1613|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 2, isoform
a protein.
Length = 1613
Score = 25.0 bits (52), Expect = 9.1
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 94 SQLSNGKRITKIED-IIDMQKGEGHFNVRQVAFHLPPENEQVSSSACTEKSLESSIYK 264
S++S RI ++D I +Q N+R A HL PE+EQ+ S E+ S YK
Sbjct: 52 SRISARARIQAVDDRYIHLQL----VNIRMAASHL-PESEQMPSLNSMEQRELSEEYK 104
>L16685-8|AAO12393.1| 285|Caenorhabditis elegans Hypothetical
protein ZC21.6a protein.
Length = 285
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 152 FCISMISSIFVIRLPFDN*DVKS 84
+CIS++S +F+I L F V S
Sbjct: 141 YCISVVSYVFIIHLLFSRRKVSS 163
>L16685-7|AAO12394.1| 306|Caenorhabditis elegans Hypothetical
protein ZC21.6b protein.
Length = 306
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 152 FCISMISSIFVIRLPFDN*DVKS 84
+CIS++S +F+I L F V S
Sbjct: 207 YCISVVSYVFIIHLLFSRRKVSS 229
>AC006673-7|AAF39925.2| 332|Caenorhabditis elegans Serpentine
receptor, class h protein4 protein.
Length = 332
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 45 KTLQKKLFKFNRYGFYVSII 104
+T +K+ K+ +Y FYVSI+
Sbjct: 126 QTFLRKVVKYIQYAFYVSIV 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,047,021
Number of Sequences: 27780
Number of extensions: 105043
Number of successful extensions: 360
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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