Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2l16
(764 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 27 2.9
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 2.9
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 27 3.9
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.9
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 5.1
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 26 6.8
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 26 6.8
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.0
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 9.0
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 25 9.0
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 25 9.0
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 27.1 bits (57), Expect = 2.9
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -1
Query: 119 LVDFLLVLNRHT**KVLKYFIKYKIDKKL 33
++ F+L+ NRH ++ KY++ + D+K+
Sbjct: 1 MIQFILIQNRHGKNRLSKYYVPFDDDEKV 29
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.1 bits (57), Expect = 2.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 620 EWLVNLSAKINNINPVIDRI 679
EW + SA +N I+PV+D++
Sbjct: 852 EWSAHYSALVNRISPVLDKL 871
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 213 KDAVQMYTLPETVAQVLCRNLPPLNASMQRAVTEIMVGR-ALLLD 344
++A Y P + LC + PPL RAV ++ G+ A+ LD
Sbjct: 240 REASNYYVAP--LEHPLCHSAPPLQMPQHRAVECVITGKPAIYLD 282
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 465 VFVSILYATNVSSISCWLLMSLAKFGNVRV 376
VF+S+L A N S+ WL+ S K V++
Sbjct: 313 VFISLLSAKNSCSLKMWLIHSFNKGWPVKI 342
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.2 bits (55), Expect = 5.1
Identities = 25/104 (24%), Positives = 45/104 (43%)
Frame = +3
Query: 84 SMSIQYKKKINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVL 263
S+S + KK+++K K KE+V + ++ E +L SK+ + T E + + L
Sbjct: 83 SISSKKKKRLDKYIENKLKKEEVASLIAKLAEERIDTSLLSSSKNLGKQATAKEKLKKSL 142
Query: 264 CRNLPPLNASMQRAVTEIMVGRALLLDTTKLVFCLPNSPERSRT 395
L + A + + + TTK N+PE+ T
Sbjct: 143 LEE--KLGLPLSDADSRLYKVVDVETTTTKSSTAETNAPEKYST 184
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 132 KEFKEQVIKTVTRIEESHNVVG 197
K F+EQV K ++IE H V+G
Sbjct: 31 KAFREQVEKHFSKIERLHQVLG 52
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +3
Query: 108 KINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPETVAQVLCRNLPPLN 287
K+ ++ EF E+ ++ ++R+E+ ++G + K +T+PE V+ + L PLN
Sbjct: 283 KMELKRVTTEFDEKSVE-ISRLEK---LLGKVMEVKSRSMEFTVPEAEIDVIEKRLQPLN 338
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 471 SDVFVSILYATNVSSISCWLLMSLAK 394
S VF ++A N+S I W+L S+ +
Sbjct: 458 STVFDDTVFALNISEILSWILSSVVR 483
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 173 NPSYCLDYLLLEFLWHFALVDFLLVLN 93
N +Y YL +F+W + VD+LL+ N
Sbjct: 916 NETYSSMYLAGKFVWDTSDVDYLLMYN 942
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.4 bits (53), Expect = 9.0
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 1/80 (1%)
Frame = +2
Query: 245 NGRAGPMQKPATAQREYATSRY*NHGGTSTTA*YHKARILFTEFTRTFPNFA-NDINNQQ 421
N P AT T Y N GTST + I T R FP+F +
Sbjct: 570 NYAKSPPSFHATQDLLRKTLAYTNSSGTSTVLSNDSSAISSTFLDRDFPDFGITSLAGSL 629
Query: 422 DIEDTLVAYRIETKTSEVLV 481
+ D+ + R +T S L+
Sbjct: 630 TLPDSKIIDRSKTHVSTQLL 649
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/60 (21%), Positives = 24/60 (40%)
Frame = +3
Query: 69 QHFLLSMSIQYKKKINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSKDAVQMYTLPET 248
+H + + K+ +N + F E + + T SH+ L + + LPET
Sbjct: 274 EHLCMYQLPELKQTVNSDHIVNSFTEMGLASTTPTSNSHSTENPLAIIPSSTSKNLLPET 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,724
Number of Sequences: 5004
Number of extensions: 64048
Number of successful extensions: 193
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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