Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2l16
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0957 - 33352904-33353212,33353316-33353465,33353544-333536...    28   7.1  
08_02_1411 + 26880766-26880911,26881000-26881097,26881207-268812...    28   9.4  
05_05_0285 - 23855219-23855371,23855391-23856063,23856239-238563...    28   9.4  

>01_06_0957 -
           33352904-33353212,33353316-33353465,33353544-33353684,
           33354116-33354709
          Length = 397

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +2

Query: 422 DIEDTLVAYRIETKTSEVLVASDLDFTACVVHRIKRKHKKN 544
           DIE   V Y + T  +++ +A  + FTAC+VH+ ++ H +N
Sbjct: 202 DIEPCGVTYWLIT-IAQIPIA--VAFTACIVHQKRKSHAQN 239


>08_02_1411 +
           26880766-26880911,26881000-26881097,26881207-26881274,
           26881595-26881683,26881786-26882007,26883056-26883790,
           26883880-26884078,26884319-26884404,26886175-26886536,
           26887290-26887921
          Length = 878

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +3

Query: 219 AVQMYTLPETVAQVLCRNLPPLNASMQRAVTEIMVGRALLLDTTKLVFCLPNSPERSRTL 398
           A   + +  T A+V    +PP+  + QRA T  M G+ ++    +    LP+S   + T 
Sbjct: 632 AALTHVISSTAAEVTTA-VPPVTVAPQRAATATMFGQQVMQQPPRGFPPLPSSSGSAATA 690

Query: 399 P 401
           P
Sbjct: 691 P 691


>05_05_0285 -
           23855219-23855371,23855391-23856063,23856239-23856301,
           23856478-23856604,23856751-23856897,23856968-23856974,
           23857203-23857379
          Length = 448

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 197 SSVSVKRRSPNVHIARNGRAGPMQKPA 277
           +S  ++RR P+VHIA  G +    +PA
Sbjct: 24  ASTGLRRRPPDVHIAGTGASAERSEPA 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,804,459
Number of Sequences: 37544
Number of extensions: 382187
Number of successful extensions: 995
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)