Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2l13
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-10|CAE47472.1|  436|Caenorhabditis elegans Hypothetical...    33   0.15 
AL033514-9|CAA22098.1|  605|Caenorhabditis elegans Hypothetical ...    33   0.15 
AF038608-11|AAC25815.1|  319|Caenorhabditis elegans Serpentine r...    31   0.60 
AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine re...    29   3.2  
AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine re...    28   5.6  
AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine r...    27   9.8  

>AL033514-10|CAE47472.1|  436|Caenorhabditis elegans Hypothetical
           protein Y75B8A.9b protein.
          Length = 436

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = -2

Query: 157 SNNMPAYLITICYHNESQILSVLFRIIN*SI*SRTK 50
           S+++PA  I +CY NES   SVL R++N SI  RTK
Sbjct: 155 SDSLPAASIVVCYFNESP--SVLIRMVN-SIFDRTK 187


>AL033514-9|CAA22098.1|  605|Caenorhabditis elegans Hypothetical
           protein Y75B8A.9a protein.
          Length = 605

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 19/36 (52%), Positives = 25/36 (69%)
 Frame = -2

Query: 157 SNNMPAYLITICYHNESQILSVLFRIIN*SI*SRTK 50
           S+++PA  I +CY NES   SVL R++N SI  RTK
Sbjct: 155 SDSLPAASIVVCYFNESP--SVLIRMVN-SIFDRTK 187


>AF038608-11|AAC25815.1|  319|Caenorhabditis elegans Serpentine
           receptor, class z protein79 protein.
          Length = 319

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
 Frame = -2

Query: 625 IVFVFFLLKLSFHLVPLMLG-----IFLFPNPSP-MSNFRFFLFVHRIAHLCQAYASVIS 464
           IVF  +L   +FH +  +L      IF FPN    ++ F+ FLF     H+ + Y  +  
Sbjct: 108 IVFTLYLCTAAFHFITFLLAAQRFLIFFFPNTEKHVAVFQKFLF----KHIWKVYLVIFV 163

Query: 463 PASTLLIVY 437
              TL I++
Sbjct: 164 KEVTLFIIF 172


>AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein54 protein.
          Length = 328

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 598 LSFHLVPLMLGIFLFPNPSPMSNFRFFLFVHRIAHLCQAYASVISP 461
           LSF + P+ + +    NP+   N+RF L    + +L  +  +V+ P
Sbjct: 17  LSFLVNPVFIYLIFTENPTKFGNYRFLLLYFALFNLIFSIMNVVVP 62


>AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein7 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 598 LSFHLVPLMLGIFLFPNPSPMSNFRFFLFVH 506
           LSF +  L   I LF  PS  +N+R FL  H
Sbjct: 24  LSFPMYSLAFFILLFKTPSYFNNYRNFLVSH 54


>AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein12 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = -2

Query: 616 VFFLLKLSFHLVPLMLGIFLFPNPSPMSNFRFFLFVHRIAHLCQAYASVISPASTLLIVY 437
           + FLL  S  +  L+ GI +  NP   + F    F H IA+    +        T +I Y
Sbjct: 14  IIFLLSFSGCIFNLLAGIVVLKNPILKNAFGALCFSHTIANFGVLFVFCTWVTPTTIIQY 73

Query: 436 LF 431
            +
Sbjct: 74  KY 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,932,871
Number of Sequences: 27780
Number of extensions: 225545
Number of successful extensions: 592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)