Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2l10
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ... 109 3e-25
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb... 87 2e-18
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 27 2.0
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 27 2.7
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 27 3.5
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 27 3.5
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 27 3.5
>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 323
Score = 109 bits (263), Expect = 3e-25
Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 1/179 (0%)
Frame = +2
Query: 179 YDEVKDALERLSPFITKTPCMPSHH-QREFTMKLYYKIESMQITGSFKERGSLNVLQLLP 355
YD+V A ER+ F KTP + S +EF ++++K E+ Q G+FK RG+LN L L
Sbjct: 10 YDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLN 69
Query: 356 LDKKKIGVVIASIGNDAIGICHYGAKLGXXXXXXXXXXXXXCKLQNCYSLGAKVILEGSN 535
++K GV+ S GN A I LG K+ G +VI+
Sbjct: 70 EAQRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY 129
Query: 536 LTESQRFARSLAKDKGLTYINARDHPHILMGYGTLALEILEQIPLVEAVIVPVGSGGLI 712
+ ++ A+ +++ +GLT I DHPH+L G GT A E+ E++ ++A+ V +G GGL+
Sbjct: 130 KDDREKMAKEISEREGLTIIPPYDHPHVLAGQGTAAKELFEEVGPLDALFVCLGGGGLL 188
>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 87.4 bits (207), Expect = 2e-18
Identities = 53/148 (35%), Positives = 75/148 (50%), Gaps = 2/148 (1%)
Frame = +2
Query: 275 LYYKIESMQITGSFKERGSLNVLQLLPLDKKKIGVVIASIGNDAIGICHYGAKLGXXXXX 454
+Y K E + SFK RG+ N + L K GV+ S GN A G+ + LG
Sbjct: 130 VYLKREDLTPVFSFKIRGAHNKMASLDKQSLKNGVIACSAGNHAQGVAYSARTLGVKATI 189
Query: 455 XXXXXXXXCKLQNCYSLGAKVILEGSNLTESQRFARSLAKDKGLTYINARDHPHILMGYG 634
K +N LGA V+L G+N ++ LAK++ L I+ D P+++ G G
Sbjct: 190 VMPQNTPEIKWRNVKRLGANVLLHGANFDIAKAECARLAKEQNLEVIHPFDDPYVIAGQG 249
Query: 635 TLALEILEQIPL--VEAVIVPVGSGGLI 712
T+ LEIL QI L ++A+ VG GGLI
Sbjct: 250 TIGLEILHQIDLRKLDAIYCAVGGGGLI 277
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/61 (27%), Positives = 34/61 (55%)
Frame = +2
Query: 182 DEVKDALERLSPFITKTPCMPSHHQREFTMKLYYKIESMQITGSFKERGSLNVLQLLPLD 361
+ +K L+ + ITKT + S + +F + Y+I Q++ ++ER L+ L+L+ D
Sbjct: 956 NSLKYLLDDFTKVITKTFSIKSI-RLQFLSLIIYEITYEQLSSWYRERTILSFLELVSFD 1014
Query: 362 K 364
+
Sbjct: 1015 Q 1015
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 27.1 bits (57), Expect = 2.7
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Frame = +2
Query: 107 SIVMSRRHEDFDEFCDPENPRPIKYDEVKDALERLSPFITKTPCMPSHHQREFTMKLYYK 286
S++ F C ENP I+Y+ + + L + P I P + MK +
Sbjct: 428 SLISPSPSSQFPVLCTLENPSSIEYNIISNILFSI-PTIPLKNASPIVELISYVMKPEFF 486
Query: 287 IESMQITGSFKE-------------RGSLNVLQLLPLDKKKIGVVIA 388
++S Q K+ +L++++LL DK+K +IA
Sbjct: 487 MKSQQNASDCKKLLSSFLYFLINNFNDNLHIIELLQKDKRKFEPIIA 533
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 105 PVSLCLAGTKILMNSVTRRILDQLNMTK 188
PVSLC+ KI N +T +D N+ K
Sbjct: 297 PVSLCVYPEKITFNWLTEGTVDSCNLCK 324
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 26.6 bits (56), Expect = 3.5
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -2
Query: 473 ELSQAPRQSLECRAWRRSDIYQWRHC 396
E+ Q R L + W + ++QW+ C
Sbjct: 5 EVDQTYRSLLTLKQWEKFSLFQWQEC 30
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +2
Query: 161 NPRPIKYDEVKDALERLSPFITKTPCMPSHHQREFTMKLYYKIESMQITGSFKERGSLNV 340
+P P + ++ A+ER++ + K P + +R TM Y S + + +L+
Sbjct: 472 SPAPTENEDSNAAIERVANTLRKNPTISRRTRRAGTMDRYATASSDYMESNLGSLPNLST 531
Query: 341 LQL 349
L L
Sbjct: 532 LSL 534
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,939,879
Number of Sequences: 5004
Number of extensions: 60791
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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