Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2l10
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0901 + 28635672-28636094,28637623-28637802,28637903-286381...    96   3e-20
04_04_0753 - 27797298-27797547,27797765-27797951,27798040-277981...    93   2e-19

>03_05_0901 +
           28635672-28636094,28637623-28637802,28637903-28638172,
           28638506-28638757,28639205-28639453,28639533-28639606,
           28639798-28639915,28640421-28640555,28640813-28640965
          Length = 617

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 53/150 (35%), Positives = 84/150 (56%), Gaps = 2/150 (1%)
 Frame = +2

Query: 269 MKLYYKIESMQITGSFKERGSLNVLQLLPLDKKKIGVVIASIGNDAIGICHYGAKLGXXX 448
           + L+ K E +Q   SFK RG+ N++  L  ++ + GV+ +S GN A G+     +LG   
Sbjct: 130 VNLWIKREDLQPVFSFKLRGAYNMMAKLSREQLERGVICSSAGNHAQGVALSAQRLGCDA 189

Query: 449 XXXXXXXXXXCKLQNCYSLGAKVILEGSNLTESQRFARSLAKDKGLTYINARDHPHILMG 628
                      K ++   LGA V+L+G +  E+Q +A+   + +G T+I   DHP ++ G
Sbjct: 190 VIVMPVTTPEIKWRSVERLGATVVLKGDSYDEAQSYAKQRCEQEGRTFIPPFDHPDVISG 249

Query: 629 YGTLALEILEQI--PLVEAVIVPVGSGGLI 712
            GT+ +EI+ Q+  PL  A+ VPVG GGLI
Sbjct: 250 QGTIGMEIVRQLQGPL-HAIFVPVGGGGLI 278


>04_04_0753 -
           27797298-27797547,27797765-27797951,27798040-27798113,
           27798719-27798949,27799047-27799133,27799244-27799434
          Length = 339

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 1/176 (0%)
 Frame = +2

Query: 188 VKDALERLSPFITKTPCMPSHHQREFTMK-LYYKIESMQITGSFKERGSLNVLQLLPLDK 364
           +++A  R++P++ KTP + S        K L++K E  Q  G+FK RG+ N +  L  D+
Sbjct: 24  IREAQARIAPYVHKTPVLSSTSIDAIVGKQLFFKCECFQKAGAFKIRGASNSIFALDDDE 83

Query: 365 KKIGVVIASIGNDAIGICHYGAKLGXXXXXXXXXXXXXCKLQNCYSLGAKVILEGSNLTE 544
              GVV  S GN A  +       G             CK+ N    G  +I    ++  
Sbjct: 84  ASKGVVTHSSGNHAAAVALAAKLRGIPAYIVIPRNAPACKVDNVKRYGGHIIWSDVSIES 143

Query: 545 SQRFARSLAKDKGLTYINARDHPHILMGYGTLALEILEQIPLVEAVIVPVGSGGLI 712
            +  A+ + ++ G   ++  ++ + + G GT++LE+LE++P ++ +IVP+  GGLI
Sbjct: 144 RESVAKRVQEETGAILVHPFNNKNTISGQGTVSLELLEEVPEIDTIIVPISGGGLI 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,327,558
Number of Sequences: 37544
Number of extensions: 362024
Number of successful extensions: 902
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)