Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2l10
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    29   0.044
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   2.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.0  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   8.8  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 29.1 bits (62), Expect = 0.044
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +2

Query: 101 LTSIVMSRRHEDFDEFCDPENPRPIKYDEVKDALERLSPFITKT 232
           L   V  +  E+ + FC P+N + +KYD++K+ +E L     +T
Sbjct: 322 LNQDVQKKLREEINTFC-PKNNKELKYDDIKE-MEYLDKVFKET 363


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 434 AWRRSDIYQWRHCLLKLSR 378
           +W +    QW  CLL++SR
Sbjct: 293 SWIKMLFLQWLPCLLRMSR 311


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 434 AWRRSDIYQWRHCLLKLSR 378
           +W +    QW  CLL++SR
Sbjct: 293 SWIKMLFLQWLPCLLRMSR 311


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 434 AWRRSDIYQWRHCLLKLSR 378
           +W +    QW  CLL++SR
Sbjct: 293 SWIKMLFLQWLPCLLRMSR 311


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 434 AWRRSDIYQWRHCLLKLSR 378
           +W +    QW  CLL++SR
Sbjct: 293 SWIKMLFLQWLPCLLRMSR 311


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 434 AWRRSDIYQWRHCLLKLSR 378
           +W +    QW  CLL++SR
Sbjct: 293 SWIKMLFLQWLPCLLRMSR 311


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 434 AWRRSDIYQWRHCLLKLSR 378
           +W +    QW  CLL++SR
Sbjct: 293 SWIKMLFLQWLPCLLRMSR 311


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -2

Query: 419 DIYQWRHCLLKLSR-RRSSFYL 357
           D+YQW H +    R  R+ +YL
Sbjct: 11  DVYQWNHTVSSGERDTRTEYYL 32


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 434 AWRRSDIYQWRHCLLKLSR 378
           +W +    QW  CLL++SR
Sbjct: 361 SWIKMLFLQWLPCLLRMSR 379


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 434 AWRRSDIYQWRHCLLKLSR 378
           +W +    QW  CLL++SR
Sbjct: 361 SWIKMLFLQWLPCLLRMSR 379


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 385 SFNRQ*RHWYMSLRRQARHSSDCRGACDNSH 477
           +F+ Q  + Y     QARHSS      +N H
Sbjct: 416 NFDNQDNNHYNHNHNQARHSSKSDNQNNNQH 446


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 402 TPLVYVTTAPSSA 440
           TP VYV+  PSSA
Sbjct: 99  TPTVYVSNEPSSA 111


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -3

Query: 694 DWNNNCFNKRNLFQNF 647
           ++NNN +NK+  ++N+
Sbjct: 105 NYNNNNYNKKLYYKNY 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,395
Number of Sequences: 438
Number of extensions: 4239
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)