Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2l05
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    29   0.72 
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    27   2.9  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    27   3.9  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   5.1  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    26   6.7  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    26   6.7  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    25   8.9  
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo...    25   8.9  

>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = +3

Query: 114 QKLDETHKKSVKADVIILGCSLSGIVAA----HKLKRRFGDSMDIVVLDLAGQTQSYSKY 281
           QK++         D + +  S S IV      HK K  F D  D   +DL  + QS S  
Sbjct: 21  QKIENVTSPIKTLDFVKVKVSSSDIVVKDSIPHKSKNVFDDFDDGYAIDLTEEHQSSSLN 80

Query: 282 NVVFEDVE 305
           N+ ++DVE
Sbjct: 81  NLKWKDVE 88


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 681 YDFPYTSDRSILTYFFLLANLLCVSEISP 595
           YD   +SDR  +  + +LAN+L  SEI+P
Sbjct: 267 YDEAGSSDRIRVLKYLVLANMLSESEINP 295


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 749 ATDQLNGRSHYFFRSWKQQCPPYMTFHTRLIVV 651
           ATD ++  ++  F  WK+Q   +M  H RL+ +
Sbjct: 550 ATDIMSSNTYQEFLVWKRQPVSFMGRHERLLAI 582


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 22/55 (40%), Positives = 26/55 (47%)
 Frame = -1

Query: 476 EQLGQPSPDSFRGYYDVWKGHVEFFGIFS*IKPRNILNHLLSGSLKIRLGYDILA 312
           EQ+  P   S R   D     +EFFG  S I   N LNH L  +   R GYD L+
Sbjct: 67  EQMNIPEFISVRNLNDD-SSSIEFFGPASNISFVNQLNHYLRKA--ERNGYDFLS 118


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 293 RRCRKGQPGYHNRAGFSRNR 352
           R C +G+PGY++  G  R+R
Sbjct: 194 RECYEGRPGYNDSNGLIRSR 213


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
 Frame = +3

Query: 96  LNTQMVQKLDETHKKSVKADVIILGCSLSGIVAAHKLKRRFGDSMDIVVLDLAGQTQSYS 275
           +NT +   L  T +K+    VI  G  +S I   +  K +F  + D +   L    Q + 
Sbjct: 15  VNTFLDVVLSRTQRKT--PTVIRSGFKISRIRGFYGRKVKF--TQDTITEKLDSILQEFP 70

Query: 276 KYNVVFEDVEKDSQDIITEPDFQ-------GTAKQMIENVARFY--LAKYAKEFH 413
           K N +      D  +I+ + D          TAK ++ENVAR Y  L KY    +
Sbjct: 71  KLNDI-HPFHADLLNILYDRDHLKIALSQLSTAKHLVENVARDYIRLLKYGDSLY 124


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
 Frame = -2

Query: 574 FWYWLISNLSITLR*SNSWKSLVHST-VLPFW----C--WNSLVNLVLTLSG 440
           F YWLIS  +IT+    S + L   T  + +W    C   + L +LVLTL G
Sbjct: 98  FVYWLISLDNITVFIQKSMEDLFEKTEKIQYWTTLLCTKHSQLFDLVLTLGG 149


>SPCC4B3.18 |||phosphopantothenate-cysteine
           ligase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 357 QMIENVARFYLAKYAKEFHVP 419
           Q+I + A FYLA    +FH+P
Sbjct: 167 QIIASRALFYLAAAVSDFHIP 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,490
Number of Sequences: 5004
Number of extensions: 69386
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)