Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2l01
         (137 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   1.5  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    20   2.6  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    19   6.1  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.6 bits (41), Expect = 1.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 84  NLPPAEHSYNELPILKKK 137
           N PP+  + +ELP LK +
Sbjct: 69  NSPPSPPAPSELPALKSR 86


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 19.8 bits (39), Expect = 2.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 118 SSLYECSAGGKF 83
           SSLY C AG +F
Sbjct: 241 SSLYTCIAGYEF 252


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 18.6 bits (36), Expect = 6.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 84  NLPPAEHSYNELPILKK 134
           NLP   H  +E+P   K
Sbjct: 376 NLPTHRHPQDEIPYCGK 392


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,218
Number of Sequences: 336
Number of extensions: 356
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 26
effective length of database: 113,849
effective search space used:  2163131
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)