Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2k21
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    28   0.26 
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   2.4  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   3.2  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    24   5.6  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    23   7.5  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    23   9.9  

>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 28.3 bits (60), Expect = 0.26
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 184 LVLEFISNFGVL-FYYIFNICGVIGIY 261
           L L F+S+F +   + +F++CGV G+Y
Sbjct: 413 LYLYFVSHFSLYNAFSVFSVCGVFGLY 439


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 160 KEEELAQMLVLEFISNFGVLFYY 228
           +EE+   +L+LEF+  +G  FYY
Sbjct: 430 REEDNFGVLLLEFLELYGKQFYY 452


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 194 NSFQILVYCFIIFL 235
           N F ++ YCF++FL
Sbjct: 73  NFFSVVTYCFVLFL 86


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 51  QTRIPSTRNIQEMVNCSVC 107
           QT+IPS + +   + C +C
Sbjct: 14  QTKIPSLKGLDSSLRCLIC 32


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 190 LEFISNFGVLFYYIFNICGVIGIYIFTIYVP 282
           + +  NFG L   +  I  VIGI +   Y+P
Sbjct: 26  ISYFWNFGSLLACVLVIQIVIGILLACFYIP 56


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 6/27 (22%), Positives = 14/27 (51%)
 Frame = +1

Query: 202 SNFGVLFYYIFNICGVIGIYIFTIYVP 282
           + +  +F Y + ICG++   + +   P
Sbjct: 352 TTYDTVFRYYYEICGIVSRQLLSFIAP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,152,401
Number of Sequences: 5004
Number of extensions: 18018
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)