Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2k21
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0735 + 5431900-5432044,5432137-5432271,5432710-5432750,543... 30 0.30
08_02_0311 - 15635165-15635590,15635777-15638698 29 0.70
08_01_0653 + 5633673-5634821,5635730-5635885,5635942-5636152,563... 27 2.1
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419... 27 2.8
08_01_0652 + 5627226-5628395,5628885-5629040,5629115-5629304,562... 27 2.8
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 26 4.9
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 26 4.9
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446... 26 4.9
07_03_0465 + 18465966-18466206,18467424-18467443,18467444-184677... 26 6.5
05_01_0522 - 4506667-4507254,4507474-4507824,4507967-4508163,450... 26 6.5
>06_01_0735 +
5431900-5432044,5432137-5432271,5432710-5432750,
5433463-5433579,5433779-5433898,5433982-5434076,
5434149-5434242,5434592-5434723,5435191-5435303,
5435443-5435566,5435884-5436000,5436083-5436177,
5436269-5436362,5436655-5436780,5436854-5436966,
5437067-5437256,5437395-5437508,5437551-5437598
Length = 670
Score = 30.3 bits (65), Expect = 0.30
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 154 EAKEEELAQMLVLEFISNFGVLFYYIFNICGVIGIYIFTIYV 279
E K E+LA L+ F N G + Y++ N+ G+ I+ Y+
Sbjct: 496 EYKVEDLAAALLNSFTYNIGQIAYFVANLSGLKRIFFRGAYI 537
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 29.1 bits (62), Expect = 0.70
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 17 YLDAQKNACYCPDKNTKYK 73
YLDAQK+ C CP YK
Sbjct: 169 YLDAQKDGCICPGCKEHYK 187
>08_01_0653 +
5633673-5634821,5635730-5635885,5635942-5636152,
5636488-5636624
Length = 550
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 39 LVTVQTRIPSTRNIQEMVNCSV 104
+VT R+PS +N++ +V CS+
Sbjct: 234 IVTPYIRVPSFKNLESLVTCSI 255
>09_03_0111 -
12440818-12441129,12441242-12441585,12441663-12441989,
12443444-12443602,12443687-12443784,12444745-12444821
Length = 438
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +1
Query: 154 EAKEEELAQMLVLEFISNFGVLFYYI 231
E K++E MLV EFI N G LF+ I
Sbjct: 214 EQKKKEFGPMLVYEFIPN-GTLFHLI 238
>08_01_0652 +
5627226-5628395,5628885-5629040,5629115-5629304,
5629590-5629729
Length = 551
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +3
Query: 39 LVTVQTRIPSTRNIQEMVNCSV 104
L+T ++PS +N++ +V+CSV
Sbjct: 240 LITPYIQVPSFKNLESLVSCSV 261
>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 26.2 bits (55), Expect = 4.9
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 240 MWCHRYIYIHHIC 278
MWCHRY Y+ ++C
Sbjct: 1503 MWCHRY-YLRNLC 1514
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 8 CKSYLDAQKNACYCPDKNTKYKKYSG 85
C Y ++ C CP NT+YK++ G
Sbjct: 48 CYEYERSEGTQC-CPQCNTRYKRHKG 72
>03_03_0186 +
15243150-15243563,15243685-15243777,15244604-15244666,
15245028-15245114,15245197-15245349,15245422-15245579,
15246458-15246692,15246782-15246892,15246942-15246968,
15247269-15248327,15248432-15248692,15249011-15249196,
15249642-15250793,15250886-15251236,15251343-15251738
Length = 1581
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 124 NYLFVVVLSFEAKEEELAQMLVLEFIS 204
NYL ++ +F++ E+EL + +L+ +S
Sbjct: 180 NYLLFMINAFQSLEDELVRETILQLVS 206
>07_03_0465 +
18465966-18466206,18467424-18467443,18467444-18467729,
18468557-18468666,18468744-18468909,18469303-18469433
Length = 317
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Frame = +2
Query: 44 YCPDKNTKY---KKYSGNGEXXXXXXXXVKTIYLLSYYHLKPKK 166
YCP Y KY GN + ++L++Y HLKP+K
Sbjct: 258 YCPKCEDIYYPRSKYQGNIDGAYFGTTFPH-LFLMTYEHLKPQK 300
>05_01_0522 -
4506667-4507254,4507474-4507824,4507967-4508163,
4508324-4508582,4508656-4508868,4508946-4509071,
4509159-4509296,4509376-4509721,4509822-4510088,
4510427-4510616,4510700-4510784,4510885-4511072,
4511262-4511457,4512027-4512113
Length = 1076
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 8 CKSYLDAQKNACYCPDKNTKYKKYSGN 88
C Y + N C CP T+YK++ G+
Sbjct: 71 CYEYERKEGNQC-CPQCKTRYKRHKGS 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,482,096
Number of Sequences: 37544
Number of extensions: 89941
Number of successful extensions: 210
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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