Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2k21
         (302 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50312-5|AAA92322.1|  369|Caenorhabditis elegans Hypothetical pr...    27   2.6  
U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical ...    27   3.4  

>U50312-5|AAA92322.1|  369|Caenorhabditis elegans Hypothetical
           protein B0222.5 protein.
          Length = 369

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 23  DAQKNACYCPDKNT 64
           D++KN CYC D NT
Sbjct: 122 DSKKNQCYCVDTNT 135


>U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical
           protein W03A5.1 protein.
          Length = 832

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 148 SFEAKEEELAQMLVLEFISNFGVLFYYIFNICG 246
           S + +    ++M +LE +++  ++FYY F+I G
Sbjct: 563 SKDERNPAFSEMEILEMVAHPNIVFYYGFSISG 595


>AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical
           protein Y11D7A.9 protein.
          Length = 297

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = +1

Query: 214 VLFYYIFNICGVI 252
           V+F+Y+F ICG++
Sbjct: 172 VIFFYVFGICGIV 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,259,698
Number of Sequences: 27780
Number of extensions: 98103
Number of successful extensions: 312
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)