Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2k18
         (168 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    24   3.1  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    23   5.4  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    22   9.4  

>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 8   FXIXNTLKKTNIVLCISMYEKNNIFY 85
           F I + L  TNI+  + + E+N  FY
Sbjct: 353 FCIGSALHHTNIIETLDIVEENKKFY 378


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 40  YCFMHLNV*KKQHFLPIFI*XFELYTIXNGKXXKKI 147
           +C  HL      HF+P FI   ++    N    KK+
Sbjct: 309 FCLNHLISYSMHHFIPSFISLLKIPLKTNDAFSKKL 344


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +2

Query: 62  YEKNNIFYL-SLFXHLNYIRF 121
           YEK N++Y+ S F +L + R+
Sbjct: 317 YEKKNLYYISSAFSNLLHCRY 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 439,037
Number of Sequences: 5004
Number of extensions: 4369
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 36
effective length of database: 2,182,334
effective search space used: 41464346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)