Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2k14
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0680 - 5958066-5960253,5960707-5961503                           28   9.6  
07_01_0508 + 3786655-3787158,3787542-3787904,3788003-3788088,378...    28   9.6  

>08_01_0680 - 5958066-5960253,5960707-5961503
          Length = 994

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 151 YCQFKNILDLVNEY*QHMTHLYSV 80
           YC+ K+I+D +  Y QH  +L+ V
Sbjct: 248 YCEVKDIIDNIRAYLQHRRYLFVV 271


>07_01_0508 +
           3786655-3787158,3787542-3787904,3788003-3788088,
           3788164-3788217,3788838-3789020,3789716-3789737
          Length = 403

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +3

Query: 417 IFKSVLKYIILK*VSFIILNGVF*KIYMYYEINVIIIYF---IPAEVNINFINKCHFSRS 587
           +F S   Y+++  +SF+I N     I+ Y ++ V++  F   I   V I+ I K H + S
Sbjct: 244 VFLSCFSYLVMYHISFLIPNKKAAHIFWYVKVTVLLSLFHAGILIWVVIHKILKKHSNIS 303

Query: 588 KH 593
            H
Sbjct: 304 MH 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,146,131
Number of Sequences: 37544
Number of extensions: 252101
Number of successful extensions: 338
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)