Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2k10
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   1.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    27   2.4  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   5.5  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    25   5.5  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.6  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 339 YFSFT*DWAAVPQHFISYDQSSCASQQTRATDRHG 235
           +FSF   WA+ P+   ++ + S +S  T  TD HG
Sbjct: 612 FFSFL-SWASSPKGLNTFKKLSDSSLSTTTTDSHG 645


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 353 SSQPSTSASRRTGPPSRNTSSPMISLRAQANRQGPQTAT 237
           S +P+TS +   GP  + TSSP  S  A  +   P + T
Sbjct: 50  SQKPNTSFTSLFGPRKQTTSSPSFSHAAPLHPLSPPSFT 88


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -2

Query: 518 FIKMYNKFNYKKKLKSNYCVAKLVCLLLSFCVQFRLLVAGTIKYLIFFL*YGHAGSSQPS 339
           F   Y   +Y +  ++++ +++   L + F  Q   +V G      FF+ +    SS  S
Sbjct: 511 FAAAYAICHYYRFFRTSHTISRKFMLSIEFIYQLATIVFGWFNIGNFFIIFYILTSSLAS 570

Query: 338 TSAS 327
           TSA+
Sbjct: 571 TSAN 574


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
 Frame = -2

Query: 368 YGHAGSSQPSTSASRRTG--PPSRNTSSPMISLRAQANRQGPQTAT 237
           YG   S+QPST   + TG  PP  N S  M         Q P   T
Sbjct: 465 YGSNYSAQPSTMQMQATGIAPPQPNMSMQMPMSMQSTGYQMPMENT 510


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 126  ILYSCYRLLKSAFIFDIT 73
            ILY+CY LL++  + +I+
Sbjct: 1564 ILYTCYHLLRNDLVMEIS 1581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,985,486
Number of Sequences: 5004
Number of extensions: 38064
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)