Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2k09
         (325 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF136170-1|AAP97260.1|   63|Homo sapiens cytochrome c oxidase VI...    46   2e-05
X16560-1|CAA34559.1|   63|Homo sapiens protein ( Human COX VIIc ...    39   0.004
BT007098-1|AAP35762.1|   63|Homo sapiens cytochrome c oxidase su...    39   0.004
BC007498-1|AAH07498.1|   63|Homo sapiens cytochrome c oxidase su...    39   0.004
BC001005-1|AAH01005.1|   63|Homo sapiens cytochrome c oxidase su...    39   0.004
AF067639-1|AAC73062.1|   63|Homo sapiens cytochrome c oxidase su...    39   0.004
DQ294736-1|ABC17635.1|  201|Homo sapiens E2-binding protein 3 va...    29   4.3  
BC030243-1|AAH30243.1|  492|Homo sapiens solute carrier family 2...    29   4.3  
AK125121-1|BAC86055.1|  194|Homo sapiens protein ( Homo sapiens ...    29   4.3  
AK055730-1|BAB70999.1|  212|Homo sapiens protein ( Homo sapiens ...    29   4.3  
BC084553-1|AAH84553.1|  371|Homo sapiens glutamate receptor, ion...    28   5.6  
BC041788-1|AAH41788.2|  371|Homo sapiens glutamate receptor, ion...    28   5.6  
AB097026-1|BAC77379.1|  371|Homo sapiens putative MAPK activatin...    28   5.6  
X74796-1|CAA52803.1|  617|Homo sapiens p85Mcm protein protein.         28   7.4  
D55716-1|BAA09534.1|  719|Homo sapiens P1cdc47 protein.                28   7.4  
D28480-1|BAA05839.1|  543|Homo sapiens hMCM2 protein.                  28   7.4  
BC013375-1|AAH13375.1|  719|Homo sapiens minichromosome maintena...    28   7.4  
AY007130-1|AAG01994.1|  351|Homo sapiens protein ( Homo sapiens ...    28   7.4  

>AF136170-1|AAP97260.1|   63|Homo sapiens cytochrome c oxidase VIIc
           protein.
          Length = 63

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 33/51 (64%)
 Frame = +2

Query: 101 RHHHDEGPPQPFDNLPFKFTNRYVATLVFSIFFGTGFWAPFIILWYSMAKK 253
           R H++EGP +   NLPF   N++    + +++FG+GF APF I+ + + KK
Sbjct: 16  RSHYEEGPGK---NLPFSVENKWRLLAMMTVYFGSGFAAPFFIVRHQLLKK 63


>X16560-1|CAA34559.1|   63|Homo sapiens protein ( Human COX VIIc
           gene for subunit VIIc of cytochrome c oxidase (EC
           1.9.3.1).  ).
          Length = 63

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +2

Query: 101 RHHHDEGPPQPFDNLPFKFTNRYVATLVFSIFFGTGFWAPFIILWYSMAK 250
           R H++EGP +   NLPF   N++       ++FG+ F  PF+++ + + K
Sbjct: 16  RSHYEEGPGK---NLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>BT007098-1|AAP35762.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +2

Query: 101 RHHHDEGPPQPFDNLPFKFTNRYVATLVFSIFFGTGFWAPFIILWYSMAK 250
           R H++EGP +   NLPF   N++       ++FG+ F  PF+++ + + K
Sbjct: 16  RSHYEEGPGK---NLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>BC007498-1|AAH07498.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +2

Query: 101 RHHHDEGPPQPFDNLPFKFTNRYVATLVFSIFFGTGFWAPFIILWYSMAK 250
           R H++EGP +   NLPF   N++       ++FG+ F  PF+++ + + K
Sbjct: 16  RSHYEEGPGK---NLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>BC001005-1|AAH01005.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc protein.
          Length = 63

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +2

Query: 101 RHHHDEGPPQPFDNLPFKFTNRYVATLVFSIFFGTGFWAPFIILWYSMAK 250
           R H++EGP +   NLPF   N++       ++FG+ F  PF+++ + + K
Sbjct: 16  RSHYEEGPGK---NLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>AF067639-1|AAC73062.1|   63|Homo sapiens cytochrome c oxidase
           subunit VIIc precursor protein.
          Length = 63

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = +2

Query: 101 RHHHDEGPPQPFDNLPFKFTNRYVATLVFSIFFGTGFWAPFIILWYSMAK 250
           R H++EGP +   NLPF   N++       ++FG+ F  PF+++ + + K
Sbjct: 16  RSHYEEGPGK---NLPFSVENKWSLLAKMCLYFGSAFATPFLVVRHQLLK 62


>DQ294736-1|ABC17635.1|  201|Homo sapiens E2-binding protein 3
           variant 1 protein.
          Length = 201

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 134 TVEVVPRRGDVDSEASMIPALCRHSSCHG-KHW 39
           T + +PR       +S++  LCR  SCHG  HW
Sbjct: 21  TSQKLPRAIQTPGNSSLMLHLCRGPSCHGLGHW 53


>BC030243-1|AAH30243.1|  492|Homo sapiens solute carrier family 23
           (nucleobase transporters), member 3 protein.
          Length = 492

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 134 TVEVVPRRGDVDSEASMIPALCRHSSCHG-KHW 39
           T + +PR       +S++  LCR  SCHG  HW
Sbjct: 126 TSQKLPRAIQTPGNSSLMLHLCRGPSCHGLGHW 158


>AK125121-1|BAC86055.1|  194|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43131 fis, clone CTONG3005803, moderately
           similar to Mus musculus yolk sac permease-like molecule
           1 (YSPL-1). ).
          Length = 194

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 134 TVEVVPRRGDVDSEASMIPALCRHSSCHG-KHW 39
           T + +PR       +S++  LCR  SCHG  HW
Sbjct: 68  TSQKLPRAIQTPGNSSLMLHLCRGPSCHGLGHW 100


>AK055730-1|BAB70999.1|  212|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31168 fis, clone KIDNE1000152, moderately
           similar to Mus musculus yolk sac permease-like molecule
           1 (YSPL-1) ).
          Length = 212

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 134 TVEVVPRRGDVDSEASMIPALCRHSSCHG-KHW 39
           T + +PR       +S++  LCR  SCHG  HW
Sbjct: 95  TSQKLPRAIQTPGNSSLMLHLCRGPSCHGLGHW 127


>BC084553-1|AAH84553.1|  371|Homo sapiens glutamate receptor,
           ionotropic, N-methyl D-asparate-associated protein 1
           (gluta protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 53  GKSYVGKAQESLRLQNRHHHDEGPPQPFDNLPFKFTN 163
           G+  V   Q+    Q+ ++ +EGPP  +DN  F  TN
Sbjct: 115 GQPQVFPGQDPDSPQHGNYQEEGPPSYYDNQDFPATN 151


>BC041788-1|AAH41788.2|  371|Homo sapiens glutamate receptor,
           ionotropic, N-methyl D-asparate-associated protein 1
           (gluta protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 53  GKSYVGKAQESLRLQNRHHHDEGPPQPFDNLPFKFTN 163
           G+  V   Q+    Q+ ++ +EGPP  +DN  F  TN
Sbjct: 115 GQPQVFPGQDPDSPQHGNYQEEGPPSYYDNQDFPATN 151


>AB097026-1|BAC77379.1|  371|Homo sapiens putative MAPK activating
           protein protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 53  GKSYVGKAQESLRLQNRHHHDEGPPQPFDNLPFKFTN 163
           G+  V   Q+    Q+ ++ +EGPP  +DN  F  TN
Sbjct: 115 GQPQVFPGQDPDSPQHGNYQEEGPPSYYDNQDFPATN 151


>X74796-1|CAA52803.1|  617|Homo sapiens p85Mcm protein protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 104 HHHDEGPPQPFDNLPFKFTNRYVA 175
           H H   PP  F+ L  K   RY+A
Sbjct: 439 HQHSRQPPSQFEPLDMKLMRRYIA 462


>D55716-1|BAA09534.1|  719|Homo sapiens P1cdc47 protein.
          Length = 719

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 104 HHHDEGPPQPFDNLPFKFTNRYVA 175
           H H   PP  F+ L  K   RY+A
Sbjct: 541 HQHSRQPPSQFEPLDMKLMRRYIA 564


>D28480-1|BAA05839.1|  543|Homo sapiens hMCM2 protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 104 HHHDEGPPQPFDNLPFKFTNRYVA 175
           H H   PP  F+ L  K   RY+A
Sbjct: 365 HQHSRQPPSQFEPLDMKLMRRYIA 388


>BC013375-1|AAH13375.1|  719|Homo sapiens minichromosome maintenance
           complex component 7 protein.
          Length = 719

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 104 HHHDEGPPQPFDNLPFKFTNRYVA 175
           H H   PP  F+ L  K   RY+A
Sbjct: 541 HQHSRQPPSQFEPLDMKLMRRYIA 564


>AY007130-1|AAG01994.1|  351|Homo sapiens protein ( Homo sapiens
           clone CDABP0042 mRNA sequence. ).
          Length = 351

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 104 HHHDEGPPQPFDNLPFKFTNRYVA 175
           H H   PP  F+ L  K   RY+A
Sbjct: 173 HQHSRQPPSQFEPLDMKLMRRYIA 196


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,521,012
Number of Sequences: 237096
Number of extensions: 872006
Number of successful extensions: 1888
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1884
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1627597384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)