Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2k08
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    95   7e-21
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    34   0.024
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    34   0.024
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    32   0.073
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    30   0.29 
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    29   0.89 
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    28   1.2  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    27   3.6  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    27   3.6  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    26   4.8  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   6.3  
SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54 |Sch...    26   6.3  

>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 95.5 bits (227), Expect = 7e-21
 Identities = 37/64 (57%), Positives = 49/64 (76%)
 Frame = +1

Query: 514 YKTELCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCH 693
           YKTE C+ ++ +G C+YG KCQFAHG +EL+   RHPKYK+E CR+F   G+CPYG RC 
Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAHGNQELKEPPRHPKYKSERCRSFMMYGYCPYGLRCC 386

Query: 694 FVHN 705
           F+H+
Sbjct: 387 FLHD 390


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 33.9 bits (74), Expect = 0.024
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 514 YKTELCRPFEEAGVCKYGDKCQFAH 588
           Y+ ++C+ ++  G C YGD C+F H
Sbjct: 185 YQPDVCKDYKLTGYCGYGDTCKFLH 209



 Score = 32.3 bits (70), Expect = 0.073
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 628 YKTELCRTFHSVGFCPYGPRCHFVH 702
           Y+ ++C+ +   G+C YG  C F+H
Sbjct: 185 YQPDVCKDYKLTGYCGYGDTCKFLH 209


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 33.9 bits (74), Expect = 0.024
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +1

Query: 529 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 702
           C  + E G C  G++C + H           P  +  +C  ++++GFCP GP C   H
Sbjct: 82  CHFYAERGWCSNGEECLYLH---------LDPSKQVGVC-AWYNMGFCPLGPICRGKH 129



 Score = 31.9 bits (69), Expect = 0.096
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 550 GVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVH 702
           G+CK G++C F H      NL++ P      C  +   G+C  G  C ++H
Sbjct: 60  GLCKKGEQCDFLHEY----NLKKMPP-----CHFYAERGWCSNGEECLYLH 101


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 32.3 bits (70), Expect = 0.073
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
 Frame = +1

Query: 526 LCRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRC----- 690
           LC        C Y + C+F H V E     + P    + C  F   G CP G +C     
Sbjct: 47  LCPAISIGNECPYKENCKFPHDV-EAYLATKAPDI-GDKCPIFERYGVCPAGFKCRWLAG 104

Query: 691 HFVHNAXG 714
           H V NA G
Sbjct: 105 HVVINADG 112


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +1

Query: 529 CRPFEEAGVCKYGDKCQFAHGVRELRNLQRHPKYKTELCRTFHSVGFCPYGPRCHFVHNA 708
           C+ F   G C  G+ C F+H +   R           +C+ F   G C +GP+C   H  
Sbjct: 47  CKFFRN-GTCTAGENCPFSHSLETER----------PICKYFLK-GNCKFGPKCALSHAL 94

Query: 709 XGS 717
            G+
Sbjct: 95  PGN 97



 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 526 LCRPFEEAGVCKYGDKCQFAHGVRELRNL 612
           +C+ F + G CK+G KC  +H +    NL
Sbjct: 73  ICKYFLK-GNCKFGPKCALSHALPGNTNL 100


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 380 CSQLRPLETELAPIGPIAPPMFPFIVCTGRV 288
           C +LRP    + P+ P+  P+   IVC G V
Sbjct: 138 CRELRPETRPVDPVSPVVSPVDGRIVCQGVV 168


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 127 LIYSCYSGSVSKETSRNKNKIWIKCRVRFAYMMSTAIMHQSAL 255
           L ++CY  SV   T    N  W+   +   Y  +TAI  Q A+
Sbjct: 379 LYFACYLCSVGVYTGAGLNVTWLSANIAPHYKRATAISLQLAI 421


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 566 GINANLLTASANYAIFSVILNTRRSCVALSIRLAS 670
           G N N + AS+N A+ + +   R  CV + ++L +
Sbjct: 357 GFNPNEVDASSNTALHTAVRYNRPECVKMLLKLGA 391


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 643 CRTFHSVGFCPYGPRCHFVH 702
           CR +++ G C  G  C FVH
Sbjct: 209 CRYYNANGICGKGAACRFVH 228


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 526 LCRPFEEAGVCKYGDKCQFAHGVRELRNLQ 615
           +C+ F++ G CK+G KC   H + + R ++
Sbjct: 69  ICKYFQK-GNCKFGSKCALEHVLPDGRKVK 97


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1036

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 86   FSSANLKFTVSSSTLYIRATVDQFPKKHQEIRIKS 190
            FSS+N    ++SS   I  TV+QF ++   + ++S
Sbjct: 979  FSSSNNLAVITSSLAKIEQTVEQFTEEGFNVNVES 1013


>SPCC613.09 |sen54||tRNA-splicing endonuclease subunit Sen54
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 550 PLLQTVGRARSCSDLWLVAEEPVH 479
           PL +T+G A S + +WL+ EE ++
Sbjct: 103 PLFKTMGTADSQNRMWLLPEETLY 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,683
Number of Sequences: 5004
Number of extensions: 54457
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)