Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2k04
(742 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 276 3e-75
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 268 4e-73
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 136 2e-33
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 118 7e-28
SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomy... 28 1.6
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 27 2.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.5
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 6.5
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 8.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 8.6
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 276 bits (676), Expect = 3e-75
Identities = 121/179 (67%), Positives = 146/179 (81%)
Frame = +2
Query: 101 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 280
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 281 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 460
+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+VD V D
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120
Query: 461 RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVST 637
+IR++AD C+GLQGFL+FH LL+ERL+++Y KKSKL+F++YPAPQVST
Sbjct: 121 KIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVST 179
Score = 62.9 bits (146), Expect = 5e-11
Identities = 26/41 (63%), Positives = 32/41 (78%)
Frame = +3
Query: 618 PRLRFPLAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 740
P + +VVEPYNS+LTTH TL+ +DC FMVDNE+ YDIC
Sbjct: 173 PAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDIC 213
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 268 bits (658), Expect = 4e-73
Identities = 122/184 (66%), Positives = 148/184 (80%), Gaps = 5/184 (2%)
Frame = +2
Query: 101 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 265
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 266 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIV 445
TG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMI 119
Query: 446 DLVLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAP 625
D VL+RIR++AD C+GLQGFL+FH LL+ERL+++YGKKS L+F++YPAP
Sbjct: 120 DSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAP 179
Query: 626 QVST 637
QVST
Sbjct: 180 QVST 183
Score = 66.9 bits (156), Expect = 3e-12
Identities = 28/41 (68%), Positives = 33/41 (80%)
Frame = +3
Query: 618 PRLRFPLAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDIC 740
P + +VVEPYNS+LTTH TL++SDC FMVDNEA YDIC
Sbjct: 177 PAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDIC 217
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 136 bits (330), Expect = 2e-33
Identities = 67/178 (37%), Positives = 97/178 (54%)
Frame = +2
Query: 101 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 280
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 281 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD 460
+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VLD
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLD 118
Query: 461 RIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQVS 634
+R+ A+ C LQGF + H LL+ ++ +Y + F++ PAP+ S
Sbjct: 119 VVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSS 176
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +3
Query: 642 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 737
VVEPYN+ L+ H +E+SD F +DNEA+ I
Sbjct: 179 VVEPYNATLSMHQLVENSDETFCIDNEALSSI 210
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 118 bits (285), Expect = 7e-28
Identities = 63/177 (35%), Positives = 99/177 (55%), Gaps = 2/177 (1%)
Frame = +2
Query: 104 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 283
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 284 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVDLVL 457
+PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ + I + ++
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIM 119
Query: 458 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAIYPAPQ 628
D I + AD L+GF + H L+ERL+ Y KK ++++P Q
Sbjct: 120 DMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQ 176
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 642 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDI 737
VV+PYNS+L ++D ++DN A+ I
Sbjct: 182 VVQPYNSLLALKRLTLNADSVVVLDNAALAHI 213
>SPAC8E11.03c |dmc1|dmp1|RecA family ATPase Dmc1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 731 IDGFIVDHESTVRVLKGCVGGEDRVVGLDDGQWKPEA 621
+ G ++ H S R+L GE+RV L+D PEA
Sbjct: 281 VGGHVMAHASATRLLLRKGRGEERVAKLNDSPDMPEA 317
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 27.1 bits (57), Expect = 2.8
Identities = 22/72 (30%), Positives = 33/72 (45%)
Frame = +3
Query: 462 ESASSLTSVPVCKDS*SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTPRLRFPLA 641
E S+ P K S P +EV S+P S+SP + S+ STP++ +
Sbjct: 506 EQLSTPLEAPAHKHSAVLQP-LEVNRSISIPPPKSISPSILHKPSLESASSTPKISSCSS 564
Query: 642 VVEPYNSILTTH 677
+P+NS L H
Sbjct: 565 TPKPFNSKLRAH 576
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +3
Query: 180 STASSLMARCPQTRPSGVETILSTLSSARPELAST 284
ST SSL + ++PS T ST SSA P S+
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +1
Query: 199 WPDAHRQDHRGWRRFFQHFLQR 264
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 90 LKSKCVSASLYTLAKPESRSVMPAGSFTAWSTASSLMARCP 212
L+S +L+ P SR++ P S + STASSL P
Sbjct: 170 LRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSP 210
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 8.6
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +3
Query: 459 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLPY*WSVSPLTTARSLNWSSPSTPRLRF 632
T S + TS P+ S SSTP AL + +P+T++ LN S+P T
Sbjct: 1753 TSSTALNTSTPITSSSVLNSSTPITSSTALNTS------TPITSSSVLNSSTPITSSTAL 1806
Query: 633 PLAVVEPYNSILTTHTTLEHS 695
+ +S+L + T + S
Sbjct: 1807 NTSTPITSSSVLNSSTPITSS 1827
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,105,080
Number of Sequences: 5004
Number of extensions: 65909
Number of successful extensions: 261
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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