Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2k02
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   2.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   3.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   3.4  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   6.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.0  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 149 AQVNNNNNIAPKFGKHMKTSAKRKKFIPPTKCKKIQNNDDGTNNR 283
           AQV+  NN   K  + + T+ + K   P    K+ +NN+    +R
Sbjct: 109 AQVHGTNNGTNKNMRRLSTTTQNKNDDPSYWEKRRKNNEAAKRSR 153


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/67 (22%), Positives = 27/67 (40%)
 Frame = +2

Query: 143 QDAQVNNNNNIAPKFGKHMKTSAKRKKFIPPTKCKKIQNNDDGTNNRSNVGITNKCLDDT 322
           +D ++ N  N+  K      T+  + K    T+     NN+D   +R  V    + + D 
Sbjct: 290 KDNKLPNTKNVRRKTNPAGVTTTTKGKVRAKTQNATPANNNDKRKSRGEVDGLGENMMDM 349

Query: 323 FYATHQL 343
               HQ+
Sbjct: 350 SLTRHQI 356


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/67 (22%), Positives = 27/67 (40%)
 Frame = +2

Query: 143 QDAQVNNNNNIAPKFGKHMKTSAKRKKFIPPTKCKKIQNNDDGTNNRSNVGITNKCLDDT 322
           +D ++ N  N+  K      T+  + K    T+     NN+D   +R  V    + + D 
Sbjct: 290 KDNKLPNTKNVRRKTNPAGVTTTTKGKVRAKTQNATPANNNDKRKSRGEVDGLGENMMDM 349

Query: 323 FYATHQL 343
               HQ+
Sbjct: 350 SLTRHQI 356


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +2

Query: 374 LDKMKEVTTNVLVESSIPSDCSQSNRFKNEYFHTHNVTGQACSPNIEDSLLLKH 535
           L +  +V   +L +SS   +C   +     Y +      Q   PN+   LLLKH
Sbjct: 67  LKRFYKVVEKILTQSSF--ECIHLSVLHKCYDYDAIPWLQNVEPNLRPKLLLKH 118


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +2

Query: 311 LDDTFYATHQLGLNVESQNDQLDKMKEVTTNVLVESS 421
           +DD   A+  L  ++E      +K+K+    + +E S
Sbjct: 458 IDDLLVASETLNEHLEHLRQVFEKLKQARMTINLEKS 494


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,984
Number of Sequences: 336
Number of extensions: 3535
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)