Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2k02
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    29   0.54 
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    29   0.54 
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    29   0.71 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.94 
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    28   1.2  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    28   1.2  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    28   1.2  
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb...    27   2.2  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    27   2.9  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    27   3.8  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    27   3.8  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   5.0  
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|...    26   6.6  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    26   6.6  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.7  

>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +2

Query: 245 KKIQNNDDGTNNRSNVGITNKCLDDTFYATHQLGLNVESQNDQLDKMKEVTTNVLVESSI 424
           +K +N+    N  +     NK L        +  L++E +ND LDK+  +  +V+ E++ 
Sbjct: 56  EKFENDTLWLNGNAEEIFANKRLRVCVEELRKARLDLEEENDDLDKIGALKLHVVSENNF 115

Query: 425 PS 430
           P+
Sbjct: 116 PT 117


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = +2

Query: 506 NIEDSLLLKHKTDTHYTQSC--GNVKVVNVDRKTKTDSLGGLIFNSINLLNDXNLTPCAF 679
           N++D  L++H+ ++H  +     N + ++VD++ K+   GG+   +  +L    LT    
Sbjct: 58  NVDDIELIQHEMESHLEKKLITVNTETMSVDKREKSYLEGGIFAITSRILVMDLLTKIIP 117

Query: 680 TRESSSSTVTELSRTQSTTSV 742
           T + +   +    R  ST +V
Sbjct: 118 TEKITGIVLLHADRVVSTGTV 138


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 509 IEDSLLLKHKTDTHYTQSCGNVKVVNVDRKTKTDSLG 619
           I D++ L++K   H T  C N+K VN       D  G
Sbjct: 484 IPDNVALQNKHAIHITDCCPNLKYVNFSNSISLDGSG 520


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 2/120 (1%)
 Frame = +2

Query: 395  TTNVLVESSIPSDC--SQSNRFKNEYFHTHNVTGQACSPNIEDSLLLKHKTDTHYTQSCG 568
            TT   + S++PS    SQS    +    T      + S  I  S   ++ T  H      
Sbjct: 764  TTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSSSSRTISTSSTNEYNTSFHAPTVSS 823

Query: 569  NVKVVNVDRKTKTDSLGGLIFNSINLLNDXNLTPCAFTRESSSSTVTELSRTQSTTSVIS 748
                 +         +      S+NL +  ++T  A+T +S +ST T L+    ++SV+S
Sbjct: 824  TTSSSSTTSLAANKGVNSNSITSLNLESTSSVTSTAYTTDSVTST-TALTSQGPSSSVVS 882


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +2

Query: 515 DSLLLKHKTD---THYTQSCGNVKVVNVDRKTKTDSLGGLIFNSINLLNDXNL 664
           DSL L+ K D   T + Q    V   +V + +  D++   IFNS+  +ND N+
Sbjct: 594 DSLQLQEKCDVLHTTFNQLDLYVGTTSVGKSSVLDNILKRIFNSLTSINDSNI 646


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 14/119 (11%)
 Frame = +2

Query: 152 QVNNNNNIAPKFGKHMKTSAKRKKFIPPTKCKKIQNNDDGTNN-----RSNVGI------ 298
           Q  NNNN+  K  K +KT+AK    I  +  KK  N+     +     ++N+ +      
Sbjct: 152 QKGNNNNLL-KENKSLKTTAKDLSDISSSSMKKANNSSKPLFSGKLTFKANIPVPTSEVV 210

Query: 299 --TNKCLDDTFYATHQ-LGLNVESQNDQLDKMKEVTTNVLVESSIPSDCSQSNRFKNEY 466
              N   + T Y+  + LG   E+ ND   + +++++N L    +P+      R+ N+Y
Sbjct: 211 TENNVTRNVTVYSNQKHLGNESENFNDMEGRAEDISSNEL----LPTPEEYPYRYNNDY 265


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 1/109 (0%)
 Frame = +2

Query: 347 LNVESQNDQLDKMKEVTTNVLVESSIPSDCSQSNRFKNEYFHTHNVTGQACSPNIEDSLL 526
           L  + +N  LD  KEV  N  V     +     NR+ N+Y   + V        +   + 
Sbjct: 100 LQAQLKNSTLDSPKEVEVNSEVVKPDSATTENENRYVNQY--NYPVEPPCAKNAVYTEIP 157

Query: 527 LKHKTDTHYTQSCGNVKVVNVDRKTKT-DSLGGLIFNSINLLNDXNLTP 670
           ++         S   ++V +  +  K+  S  G I  S++  N+ N TP
Sbjct: 158 IELDPHAFLGDSAKRIRVDSDSKDAKSVPSENGRIRVSMSPQNEINFTP 206


>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +2

Query: 311 LDDTFYATHQLG-LNVESQNDQLDKMKEVTTNV---LVESSIPSDCSQSNRFKNEYFHTH 478
           L   F + H  G L V S  D+ D+  E+T  +   L+ES  P   S+ N+ +       
Sbjct: 73  LSQAFASVHPGGTLRVYSTADEADESFEMTALLSGWLIESKSPWILSRPNQVEAVPIKLS 132

Query: 479 NVTGQACSPN 508
           N  GQ+ S N
Sbjct: 133 NKNGQSASKN 142


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = +2

Query: 401 NVLVESSIP--SDCSQSNRFKNEYFHTHNVTGQACSPNIEDSLLLKHKTDT---HYTQSC 565
           N L  S+ P  S+C   N F+NE F   ++        I+  + + H  DT      Q+ 
Sbjct: 124 NSLENSTNPLLSNCGSPNSFQNETFTGPSLNEFDADDKIQRQMKILHSVDTIDPSTVQNY 183

Query: 566 GNVKVVNVDRKTKTDSL 616
            +  + N + K KT+ +
Sbjct: 184 PSADMSNPEVKLKTEEI 200


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -1

Query: 321 VSSRHLLVIPTFDLLFVPSSLFCIFLHFVGGINFLRFADVFMCF 190
           V+  HLL++P      +PS++  +F+H    ++F   ++VF CF
Sbjct: 291 VNDYHLLLVPNMVRERIPSAIIGLFIH----VSF-PSSEVFRCF 329


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 353 VESQNDQLDKMKEVTTNVLVESSIPSDCSQSNRFKNEYFHTHNVTGQACSPNIEDSLLLK 532
           +E  N+Q  K KE+ +N+L  S      S+      EY+ T        +  + + LLL+
Sbjct: 686 MEVYNNQFSKNKELCSNLLSSSLTAKAISEGVSKGLEYYKTVEQRLAEINKTLGEQLLLR 745

Query: 533 HK 538
            K
Sbjct: 746 RK 747


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 189 ENT*KHLQS-VKNLFLQRNVKKYRIMMMVQIIDQMLVSLTNALMTHFMQHINW 344
           ENT +  +S  K  F++ ++   +    VQI++ MLV   + ++T+    +NW
Sbjct: 674 ENTSEESESDSKKEFVEHDILPVK---WVQILEDMLVGSVDVMVTNGFDRLNW 723


>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 247 FTFRWRNKFFTLCRCFHVFSEFWCYVII 164
           F  +WRN FFT C+     S  +C V++
Sbjct: 154 FLKKWRNMFFTFCK-----SPIFCLVLL 176


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 236 TKCKKIQNNDDGTNNRSNVGITNKCLDDT 322
           T   KI+ N +G+N+ + + +TN    D+
Sbjct: 64  TNASKIEINKEGSNSNTKLDVTNSTTSDS 92


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +1

Query: 19  SFFYLFINNANILFFVL--IKATYVYSRMYSIEKNK 120
           +FF+++   ANI   +L  I++TYV SR Y+ E N+
Sbjct: 426 NFFHMWNMRANIPENMLDYIQSTYVSSRQYNKEINE 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,143
Number of Sequences: 5004
Number of extensions: 55244
Number of successful extensions: 152
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)