Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2k02
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0177 + 11269754-11270320,11271701-11272180,11272663-112732...    29   3.0  
09_01_0081 - 1173593-1173790,1173949-1174035,1174122-1174349           29   5.2  
08_02_0843 - 21759183-21759556,21760255-21762913                       29   5.2  

>11_03_0177 +
           11269754-11270320,11271701-11272180,11272663-11273292,
           11273377-11273443,11273510-11273620,11273696-11275206
          Length = 1121

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = +2

Query: 206 SAKRKKFIPPTKCKKIQNNDDGTNNRSNVGITNKCLDDTFYATHQLGLNVESQNDQL--D 379
           S KRK+ +     +++  N +  ++     +    +D+T   TH +    E Q   +  D
Sbjct: 530 SRKRKECVSFQAPEELGVNPETLSSFHIQEMKKNRVDETIEGTHDIAAISEEQTKLIFRD 589

Query: 380 KMKEVTTNVLVESSIPSDCSQ 442
           +  E+ TNV+   +IPS+ +Q
Sbjct: 590 EHNELPTNVIAGPAIPSEKNQ 610


>09_01_0081 - 1173593-1173790,1173949-1174035,1174122-1174349
          Length = 170

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +2

Query: 413 ESSIPSDCSQSNRFKNEYFHTHNVTGQACSPNIEDSLLLKHKTDTHYTQSCGNV-KVVNV 589
           + S P +   ++ F   YF T  V  +AC    E+S+ L     T YT +   +   + V
Sbjct: 16  KESQPLNSRSASLFMQNYFPTIPVENEACK---ENSVGLPQMVQTCYTAAGNRIPNFIAV 72

Query: 590 DRKTKTDSLGGLIFNSINLLNDXNLTPC 673
           +   ++D  GG +F+  + +N   L  C
Sbjct: 73  NYYMRSD--GGGVFDVQDRINGVTLCGC 98


>08_02_0843 - 21759183-21759556,21760255-21762913
          Length = 1010

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1

Query: 429 LGILDSTKTLVVTSFILSSWSF*DST 352
           L +LD  KTL++ S I S+WS  D+T
Sbjct: 27  LALLDLAKTLILPSSISSNWSADDAT 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,498,248
Number of Sequences: 37544
Number of extensions: 284110
Number of successful extensions: 631
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)