Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2k02
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78414-3|CAD60425.1|  309|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U13643-3|AAA21086.3|  394|Caenorhabditis elegans Brca homolog (t...    30   2.0  
AY523518-1|AAR98640.1|  394|Caenorhabditis elegans potential BRC...    30   2.0  
AF000198-3|AAT81147.1|  125|Caenorhabditis elegans Hypothetical ...    29   4.7  
AF000198-2|AAB53055.2|  748|Caenorhabditis elegans Hypothetical ...    29   4.7  
AC006777-6|AAK72307.1|  517|Caenorhabditis elegans Hypothetical ...    28   6.2  
AF067616-2|AAC19188.2|  551|Caenorhabditis elegans Deubiquitylat...    28   8.1  

>Z78414-3|CAD60425.1|  309|Caenorhabditis elegans Hypothetical
           protein W09D12.3 protein.
          Length = 309

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 404 VLVESSIPSDCSQSNRFKNEYFHTHNVTG 490
           + +ESS+P   + S  F + YFH  NVTG
Sbjct: 72  IFLESSLPGCLTLSKLFVSLYFHLQNVTG 100


>U13643-3|AAA21086.3|  394|Caenorhabditis elegans Brca homolog
           (tumor suppressorgene brca1) protein 2 protein.
          Length = 394

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 575 KVVNVDRKTKTDSLGGLIFNSINLLNDXNLTPCAFTRESSSSTVTE 712
           K++N D K+K+ S GG     +   N  +     F RE +SST T+
Sbjct: 55  KMLNSDLKSKSSSKGGFSSPLVRKNNGSSAFVSPFRREGTSSTTTK 100


>AY523518-1|AAR98640.1|  394|Caenorhabditis elegans potential
           BRCA2-like protein (44.7kD) (3H990) protein.
          Length = 394

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 575 KVVNVDRKTKTDSLGGLIFNSINLLNDXNLTPCAFTRESSSSTVTE 712
           K++N D K+K+ S GG     +   N  +     F RE +SST T+
Sbjct: 55  KMLNSDLKSKSSSKGGFSSPLVRKNNGSSAFVSPFRREGTSSTTTK 100


>AF000198-3|AAT81147.1|  125|Caenorhabditis elegans Hypothetical
           protein T28F2.4b protein.
          Length = 125

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 194 HMKTSAKRKKFIPPTKCKKIQNNDDGTN 277
           H K  +K  KF+ P K +K++   DG N
Sbjct: 38  HYKEPSKEPKFVHPAKLEKVKRIHDGLN 65


>AF000198-2|AAB53055.2|  748|Caenorhabditis elegans Hypothetical
           protein T28F2.4a protein.
          Length = 748

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 194 HMKTSAKRKKFIPPTKCKKIQNNDDGTN 277
           H K  +K  KF+ P K +K++   DG N
Sbjct: 38  HYKEPSKEPKFVHPAKLEKVKRIHDGLN 65


>AC006777-6|AAK72307.1|  517|Caenorhabditis elegans Hypothetical
           protein Y46H3D.4 protein.
          Length = 517

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 16  ISFFYLFINNANILFFVLIKATYVYS-RMYSIEKNKLYKN 132
           ++FF LF NN+ ++FF+L      YS   + + +   ++N
Sbjct: 478 LNFFILFSNNSILIFFILKVFVIFYSEHSFLVRRTSKFRN 517


>AF067616-2|AAC19188.2|  551|Caenorhabditis elegans Deubiquitylating
           with usp/ubp andotu domains protein 2 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = +2

Query: 158 NNNNNIAPKFGKHMKTSAKRKKFIPPTKCKKIQNNDDGTNN-RSNVGITNKCLDDTFYAT 334
           N N  + P F    +  A   +   P +C ++  ND  +NN R ++G   + + +   A 
Sbjct: 216 NKNCRVEPTF----ELDATSLRNFMPVECSELNKNDAHSNNSRLHIGADEEVVQEDVTAR 271

Query: 335 HQLGLNVESQNDQLD 379
            QL  +V S     D
Sbjct: 272 KQLFFDVFSNMADFD 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,928,598
Number of Sequences: 27780
Number of extensions: 303073
Number of successful extensions: 940
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)