Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2k02
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.3  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 311 LDDTFYATHQLGLNVESQNDQLDKMKEVTTNVLVE 415
           +++T   T QLGL +    +   K + +TTNV VE
Sbjct: 53  MNNTETLTVQLGLKLSQLIEMNLKNQVMTTNVWVE 87


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 392 VTTNVLVESSIPSDCSQSNRFKN 460
           VT   L+ ++ P DC  +N +KN
Sbjct: 7   VTVACLLLAASPIDCVDANWYKN 29


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 209 AKRKKFIPPTKCKKIQNNDDGTNNRSNVGITNKC 310
           ++  K I     K I NN++   N +N    N C
Sbjct: 76  SREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNC 109


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 209 AKRKKFIPPTKCKKIQNNDDGTNNRSNVGITNKC 310
           ++  K I     K I NN++   N +N    N C
Sbjct: 76  SREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNC 109


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 209 AKRKKFIPPTKCKKIQNNDDGTNNRSNVGITNKC 310
           ++  K I     K I NN++   N +N    N C
Sbjct: 76  SREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNC 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,480
Number of Sequences: 438
Number of extensions: 3829
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)