Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j24
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    35   0.010
SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.8  
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...    26   6.4  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   6.4  
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...    26   6.4  
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    25   8.4  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
 Frame = +2

Query: 410 WKDFYPLNVIYDFLDALERQYPSICTVTVIGNTVEGRDVKMLKISNSNA-------RNTA 568
           +K +  L  I  +L  +   Y  +  +  +G T EGR +  LK++  +        RN  
Sbjct: 180 FKSYQNLESINSWLRLMASLYKDLSELVPVGITAEGRTILGLKLNGRHPSDNGEKIRNKK 239

Query: 569 VWL-DGTIHAREWISTSVVTYIADHIARSFNT 661
           V +  G  HAREWI    V Y A  +   +++
Sbjct: 240 VIIIQGGSHAREWIGIPSVCYAAWQLLAKYDS 271



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 687 DWFFVPVVNPDGY 725
           +W F+PV+N DGY
Sbjct: 283 EWIFIPVLNVDGY 295


>SPCC1919.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 256

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 107 LWLVTDWNFTLITKIYWYF 51
           LW++ D    L+  +YWYF
Sbjct: 76  LWILADPAILLVQSVYWYF 94


>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 143 VKCLKEGQRIFVKSLDTKGAINVCKERHSAMDVIVEGTRTMQVEKLLRE 289
           +K LKE  R      D K   NV    + ++D I+E  RTM+ + L +E
Sbjct: 82  IKALKEPAR------DRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKE 124


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 561  FLALLFEIFNILTSLPSTVLPITVTVQIDGYWRSN 457
            F+  +   F ILT +P+ +  +T  + +   W+SN
Sbjct: 1013 FIQFIRVHFVILTPMPAVIFCVTAALTVTYSWKSN 1047


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 143 VKCLKEGQRIFVKSLDTKGAINVCKERHSAMDVIVEGTRTMQVEKLLRE 289
           +K LKE  R      D K   NV    + ++D I+E  RTM+ + L +E
Sbjct: 82  IKALKEPAR------DRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKE 124


>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 582 PSSQTAVFLALLFEIFNILTSLPST 508
           P+S TA F ++ F  FN L  LP++
Sbjct: 355 PASNTAAFSSISFGGFNSLNQLPTS 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,058,013
Number of Sequences: 5004
Number of extensions: 65097
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)