Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2j23
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual 34 0.015
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 0.18
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 30 0.24
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.0
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 26 4.0
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 26 5.2
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 25 6.9
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 6.9
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 25 6.9
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 25 9.1
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 9.1
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch... 25 9.1
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 25 9.1
>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 34.3 bits (75), Expect = 0.015
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +3
Query: 402 WIIDPVDGTMNFVHGFPHSSISVGLTINKEPVVGIIYNPIL 524
W +DP+DGT F+ G + +I + L N +PVV I P L
Sbjct: 133 WTLDPIDGTKGFLRGAQY-AICLALIENGKPVVSAIGCPNL 172
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 24.6 bits (51), Expect(2) = 0.18
Identities = 21/70 (30%), Positives = 29/70 (41%)
Frame = -2
Query: 499 TTGSLLIVRPTDIELCGKPCTKFIVPSTGSMIHVGESVNSHFVPSATDSSPINLWSGKAL 320
TTGS P+ C T +P TG + + P++T S+ I +
Sbjct: 100 TTGSSSSPLPSTSTSC---TTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPI------ 150
Query: 319 ERPPTSVSST 290
PPTS SST
Sbjct: 151 --PPTSTSST 158
Score = 24.6 bits (51), Expect(2) = 0.18
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 313 PPTSVSSTFLSISVTRSMSHDFSTKDL 233
PPTS SST + I T + S D ++ L
Sbjct: 196 PPTSTSSTSIPIPPTSTSSTDTNSSPL 222
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 30.3 bits (65), Expect = 0.24
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -2
Query: 391 SVNSHFVPSATDSSPINLWSGKALERPPTSVSSTFLSISVTRSMSHDFSTKDLQPLMCS 215
S +SH P++ SS L+ + PP S SS+ L S T + +++ PL+ S
Sbjct: 234 SSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASRQPSPLVSS 292
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.0
Identities = 22/60 (36%), Positives = 28/60 (46%)
Frame = -2
Query: 421 STGSMIHVGESVNSHFVPSATDSSPINLWSGKALERPPTSVSSTFLSISVTRSMSHDFST 242
ST S I S +S F + + SS + S + PTS SST S S + S S ST
Sbjct: 302 STSSTISSSSSSSSSFSSTLSSSS---MSSSSSFSSSPTSSSSTISSSSSSPSSSSFSST 358
Score = 25.8 bits (54), Expect = 5.2
Identities = 22/80 (27%), Positives = 34/80 (42%)
Frame = -2
Query: 502 PTTGSLLIVRPTDIELCGKPCTKFIVPSTGSMIHVGESVNSHFVPSATDSSPINLWSGKA 323
P++ S + + + P T ST S + S +S S++ SS + S +
Sbjct: 222 PSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSL---SSSSSSSTASSSSSSSSIISSSSS 278
Query: 322 LERPPTSVSSTFLSISVTRS 263
PTS SST S S + S
Sbjct: 279 SSSSPTSTSSTISSSSSSSS 298
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 387 TDSPTWIIDPVDGTMNFVHGFPHSS 461
T+ TW+ VD MN V F H S
Sbjct: 287 TEEKTWLSQSVDADMNPVFSFEHLS 311
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 5.2
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +3
Query: 69 STHNL--IIKKY*NKSQKTIIELVKLKMTDKVDQYYDVAL 182
+T N+ I++K K + T IE + LKM D +Y DV L
Sbjct: 2 NTRNMFDILRKGIFKDEITQIEKILLKMEDNTYEYVDVFL 41
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +3
Query: 237 SFVLKSCDIDLVTEIDKKVEDTLVGGLSKAFPDHKFIGEESVADGTKCELTDS 395
S+ +S I + ++D + + K FPD++ +G T+C L D+
Sbjct: 297 SWFSESAMILFLNKLDLFKRKVHISPIQKHFPDYQEVGSTPTFVQTQCPLADN 349
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 429 MNFVHGFPHSSISVGLTINKEPVVGIIYNPILGQMF 536
+ + +P++ +VGLT ++PV I P+ G F
Sbjct: 351 VKLIDKYPYAK-TVGLTFTEKPVFSYILKPLGGDKF 385
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +3
Query: 405 IIDPVDGTMNFVHG---FPHSSISVGLTINKEPVV 500
++ +DGT++++HG FP LT+ K +V
Sbjct: 323 LVSAIDGTVDYLHGKSLFPEKRNFKELTMRKRSIV 357
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 126 ELVKLKMTDKVDQYYDVALSLVKTCGNLISEHIN 227
+L+ L++TD + V ++V C NLIS +++
Sbjct: 321 KLISLELTDTARIHVSVINAIVDCCPNLISLNLS 354
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.0 bits (52), Expect = 9.1
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -2
Query: 385 NSHFVPSATDSSPINLWSGKALERPPTSVSSTFLSISVTRS---MSHDFSTKDLQPLMCS 215
+ ++VP + S +NL S A++ P L +V RS + K+ ++C
Sbjct: 947 SEYYVPQSHQSDSVNLTSNDAIKIIP-----FILGFAVKRSHGWVMPRSDQKNALEIICK 1001
Query: 214 LIRFP 200
+IRFP
Sbjct: 1002 VIRFP 1006
>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 538 VNICPKIGL*IIPTTGSL-LIVRPTDIELCGKPCTKFIVPSTGSMIHVGES 389
V C +G+ + ++ L L ++ D+ CG P P+ ++H GE+
Sbjct: 319 VMACADLGVCLHTSSSGLDLPMKVVDLFGCGVPVIALSYPTISELVHDGEN 369
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 405 IIDPVDGTMNFVHGFPHSSISVG 473
++ ++GT FVH P ++IS+G
Sbjct: 648 LMQTLEGTPAFVHAGPFANISIG 670
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,482,785
Number of Sequences: 5004
Number of extensions: 50780
Number of successful extensions: 167
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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