Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j23
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.47 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.61 

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -2

Query: 319 ERPPTSVSSTFLSISVTRSMSHDFSTKDLQPLMCSLIRFPQVFTRDKA 176
           E  PT  S+T +  ++T     D  + D+Q      I+F  + T D +
Sbjct: 295 ETQPTPPSATLVGTTITHLRDPDHHSTDIQNCDSVKIKFETLHTMDSS 342


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 321 KAFPDHKFIGEESVADGTKCELTDSPTWIIDPVDGTMNFVHGFPHSSISV-GLTINKEPV 497
           K   DH    E+SV         ++PT  +  + GT   +   P SS S+  +T+ K+ +
Sbjct: 817 KNINDHCVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVI 876


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,284
Number of Sequences: 438
Number of extensions: 3318
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)