Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2j22
(203 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 1.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 24 3.2
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 24 3.2
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 24 3.2
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 24 3.2
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 24 3.2
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 24 3.2
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 24 3.2
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 24 3.2
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 24 3.2
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 24 3.2
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 24 3.2
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 24 3.2
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo... 23 5.5
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 23 5.5
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 23 5.5
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb... 23 7.3
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 22 9.7
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 22 9.7
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 1.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +1
Query: 28 YGSVCLVRIFNTLLLTSDVCMFVTES 105
Y S+ ++R+F T L+ SD+ ++ E+
Sbjct: 635 YVSMEIIRVFQTFLVQSDIDLYYPEN 660
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 128 KGFKIVFKDSVTNIHTSEVNKS 63
KG + ++ V N HT ++NKS
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKS 965
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 128 KGFKIVFKDSVTNIHTSEVNKS 63
KG + ++ V N HT ++NKS
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKS 965
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 128 KGFKIVFKDSVTNIHTSEVNKS 63
KG + ++ V N HT ++NKS
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKS 965
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 128 KGFKIVFKDSVTNIHTSEVNKS 63
KG + ++ V N HT ++NKS
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKS 965
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 128 KGFKIVFKDSVTNIHTSEVNKS 63
KG + ++ V N HT ++NKS
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKS 965
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 128 KGFKIVFKDSVTNIHTSEVNKS 63
KG + ++ V N HT ++NKS
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKS 965
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 128 KGFKIVFKDSVTNIHTSEVNKS 63
KG + ++ V N HT ++NKS
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKS 965
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 128 KGFKIVFKDSVTNIHTSEVNKS 63
KG + ++ V N HT ++NKS
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKS 965
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 128 KGFKIVFKDSVTNIHTSEVNKS 63
KG + ++ V N HT ++NKS
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKS 965
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 128 KGFKIVFKDSVTNIHTSEVNKS 63
KG + ++ V N HT ++NKS
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKS 965
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 174 RSLISIPDFELI*RFERVQNRVQRFRYKHTY 82
R+ +++P FEL +QN V +KH Y
Sbjct: 58 RNPLNVPLFELPVNSLELQNSVSNDMFKHVY 88
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 3.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 128 KGFKIVFKDSVTNIHTSEVNKS 63
KG + ++ V N HT ++NKS
Sbjct: 944 KGIRKQIQEYVQNCHTCQINKS 965
>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 23.0 bits (47), Expect = 5.5
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 25 DYGSVCLVRIF 57
D+GS+CLV IF
Sbjct: 213 DFGSICLVPIF 223
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 52 IFNTLLLTSDVCMFVTESLN 111
+F+T + SDV FVT LN
Sbjct: 626 VFSTSITRSDVLHFVTRLLN 645
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 66 FINFRRMYVCNGIFEHDFEPFQNVRLTR 149
F+N R Y + F HDFE +V L+R
Sbjct: 609 FLNKVRTYDPDVYFGHDFEMCYSVLLSR 636
>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2386
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +1
Query: 28 YGSVCLVRIFNTLLLTSDVCMFVTESLN 111
+G +C ++ NTL S++ +F+ L+
Sbjct: 395 FGEICTGKLENTLFSNSELNLFLLHYLS 422
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 61 TLLLTSDVCMF 93
TLL+TS +CMF
Sbjct: 334 TLLITSAICMF 344
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 22.2 bits (45), Expect = 9.7
Identities = 8/34 (23%), Positives = 18/34 (52%)
Frame = -1
Query: 131 LKGFKIVFKDSVTNIHTSEVNKSVLKIRTKHTDP 30
++ KI+ K ++ +H + ++ +RT DP
Sbjct: 325 IEHIKILSKKNIAFVHFLNIRDAIKVVRTLSCDP 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 788,057
Number of Sequences: 5004
Number of extensions: 12309
Number of successful extensions: 34
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 47
effective length of database: 2,127,290
effective search space used: 42545800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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