Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j22
         (203 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0668 + 30749474-30750007,30750818-30751403,30751405-307524...    27   1.6  
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076     26   3.6  
02_01_0051 - 385738-385968,386439-386864                               26   4.8  
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143...    25   6.4  
05_04_0215 - 19117335-19117390,19118051-19118426,19118861-191189...    25   8.4  
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467...    25   8.4  
01_06_1300 + 36116511-36116636,36116672-36116734,36117782-361178...    25   8.4  

>02_05_0668 +
           30749474-30750007,30750818-30751403,30751405-30752497,
           30753105-30753255,30754055-30754870
          Length = 1059

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 158 YQISS*SDVLKGFKIVFKDSVTNIHTSEVNKSVLKIRTKHTDP 30
           Y++   SD+  G + VF D +  I ++  N+  +K   K   P
Sbjct: 515 YEVEEISDIKNGTQHVFSDGIGKISSAFANEVAMKCNLKRFAP 557


>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
          Length = 748

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 69  INFRRMYVCNGIFEHDFEPFQNVRLTRNLVY 161
           ++FRR+  C G+F + ++  + VR   N V+
Sbjct: 55  LSFRRLPTCGGMFLYRYDLTRIVRFVLNFVF 85


>02_01_0051 - 385738-385968,386439-386864
          Length = 218

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 112 CSKIPLQTYIRLKLIKAY*KFALSTQTRNLKPS 14
           C +IPL++ +R   IK Y     + +  NL P+
Sbjct: 145 CQEIPLESGLRFAQIKVYQTGPFNVEAANLLPT 177


>01_05_0195 -
           19111983-19112477,19112646-19113950,19114053-19114322,
           19118884-19118950,19119229-19119284,19119530-19119590,
           19120181-19120297,19120570-19120682,19120774-19120848,
           19121464-19122045,19122056-19122271,19122372-19122497,
           19126152-19126190,19126266-19126360,19126423-19126962,
           19127102-19127327,19127385-19127437,19127534-19127701,
           19128353-19128707,19128785-19128876,19129891-19129993
          Length = 1717

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 39  VLSANF*YAFINFRRMYVCNGIF 107
           VL+ NF Y   N+  +Y+CN  F
Sbjct: 158 VLAVNFLYRRFNYGTVYLCNHAF 180


>05_04_0215 -
           19117335-19117390,19118051-19118426,19118861-19118919,
           19120455-19120712,19120853-19121059,19121201-19121351
          Length = 368

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 169 LNKYTRFRVNLTF*KGSKSCSKIPL 95
           L +  RFR+ LT  K   SCS IP+
Sbjct: 221 LTRDQRFRIALTKSKALPSCSTIPI 245


>03_03_0149 +
           14843880-14844145,14846501-14846561,14846608-14846720,
           14848448-14848540,14849578-14849793,14853773-14856023
          Length = 999

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 126 FQNVRLTRNLVYLLRTDDNKT 188
           F N  ++RNLV L+  DDN T
Sbjct: 575 FLNELISRNLVNLVLVDDNST 595


>01_06_1300 +
           36116511-36116636,36116672-36116734,36117782-36117833,
           36118144-36118224,36118651-36118775,36118831-36118934,
           36119487-36119615,36119899-36121054
          Length = 611

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 158 YQISS*SDVLKGFKIVFKDSVTNIHTSE 75
           YQI +  DV+     +F D +T  HTSE
Sbjct: 396 YQIPNMEDVVPVSSSLFSDHLTGNHTSE 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,268,620
Number of Sequences: 37544
Number of extensions: 58301
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 14,793,348
effective HSP length: 47
effective length of database: 13,028,780
effective search space used: 260575600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)