Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j18
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    29   0.90 
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    27   3.6  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    26   4.8  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    26   6.3  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   8.4  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 402 DLQFLLHYRMDRQNAYQVELDVAEVVKEVT 313
           D   L HYR D++ A ++EL V E +K ++
Sbjct: 204 DQATLTHYRSDKERAEKIELRVHESLKRIS 233


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/30 (33%), Positives = 21/30 (70%)
 Frame = -3

Query: 513 VTLVRNLLLGPKGFSSMKNKWYFLNLQRGF 424
           V++++  L G  GF+S+ N+W+   +++GF
Sbjct: 65  VSIIQRQLNGYVGFASLPNQWHRRCVRQGF 94


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 456 YSSYWKSPLGQVKDSVPMLPEGFDSTT 536
           Y S     + +++D+VP L  G++STT
Sbjct: 438 YRSNLNDKIAELRDAVPTLRSGYNSTT 464


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -1

Query: 392 FCYI-TEWTGKTHIRWNWMSQRW 327
           F Y+ + W   T++  NW+S+ W
Sbjct: 555 FTYVASNWRSSTNLILNWLSEEW 577


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +3

Query: 372 PFCNVA-KIVNPPIKTKFQTLVEDL--KNTIYSSYWKSPLGQVKD--SVPMLPEGFD 527
           P+ NVA K+++ P      +         +  SSY +SP GQ++D  SVP   +G D
Sbjct: 137 PYKNVAPKVIDSPSARHMHSNSPSFPPSQSHTSSYDQSPKGQLRDNISVPNQQDGLD 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,257
Number of Sequences: 5004
Number of extensions: 61092
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)