Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j13
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    30   0.29 
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    29   0.66 
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.2  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        25   8.2  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +1

Query: 79   TEDFLKLIINNTINTYCFTKLNVDFISTKRSLNVYIKKLR 198
            TE  L L  +N +  YC      DFI     L  YI KLR
Sbjct: 3234 TESNLSLFADNILPDYCKQLFKEDFIVNSNGLKSYIFKLR 3273


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = -1

Query: 506 ILFHPIIFFLKLYPYIALIFLHIMQDSFLPP--LLIIHCQCLPLAKKTTLMCSMSPT 342
           I+FH  +F  KL+  I LI   I Q  F P   +L+I CQCL +    T++ S   T
Sbjct: 218 IIFHSGVFSYKLFRAI-LIRKKIGQFPFGPMQCILVISCQCLIVPATFTIIDSFIHT 273


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
 Frame = -1

Query: 608 PSRNMLLNFSNDVVSL*--LHFLFVPVKNSLLETSVILFHPIIFFLKLYPYIALIFLHIM 435
           P + +L N +  ++S+   +HF  +P  N  L     L+H II    L+    LI  H +
Sbjct: 128 PKKKVLKNRAKSLLSIKSHVHFHLIPFINFFL-----LYHQIILSHSLFHISHLISFHFL 182

Query: 434 QDSFL--PPLLIIHCQCLPLAKKTTLMCSMSP 345
             SFL  P L  I   C  L   +      SP
Sbjct: 183 FFSFLSFPLLSFILFPCFSLFLSSNSFSLASP 214


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 100 IINNTINTYCFTKLNVDFISTKRSLNVYIKKLRYFFP 210
           +I+ TI T   TK+   F  TKR  N   K++    P
Sbjct: 1   MISKTIKTLIITKIFFSFKQTKRKKNKNKKRILSILP 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,914,067
Number of Sequences: 5004
Number of extensions: 60868
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)