Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j13
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical pr...    32   0.36 
U64857-10|AAC25860.1|  265|Caenorhabditis elegans Hypothetical p...    29   3.3  
AC024882-7|AAF60924.1|  285|Caenorhabditis elegans Hypothetical ...    29   3.3  
U80842-3|AAB37947.1|  325|Caenorhabditis elegans Serpentine rece...    29   4.4  
Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    28   7.7  

>Z81457-1|CAB03812.1|  423|Caenorhabditis elegans Hypothetical
           protein C01G12.1 protein.
          Length = 423

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 25/95 (26%), Positives = 46/95 (48%)
 Frame = +2

Query: 425 KSPALYAKKLKQYTGIILKRRLWDEIVLHLFPTRSFSQEQKENAVKVIQRRWKNLRACFS 604
           K P LY    +     + ++RLW+ I  ++ P           A +  ++RW  LR  + 
Sbjct: 17  KYPCLYNHSRRGSGDTMERQRLWESIAKNIDPNC---------AAEFAKKRWLQLRDRYR 67

Query: 605 RELRCQKDVKSEQPEPK*KRYVYFDKLLFLVPFME 709
           +EL+    +K+    P   R+ YF++L +L PF++
Sbjct: 68  KELKIA--IKNGFVTPV--RWCYFNQLSWLDPFLK 98


>U64857-10|AAC25860.1|  265|Caenorhabditis elegans Hypothetical
           protein C37C3.3 protein.
          Length = 265

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -3

Query: 528 LLVGNKCNTISSHNLLFKIIPVYCFNFFAYNAGLF 424
           L+V + C   +S+N    ++ ++CF +F     LF
Sbjct: 18  LIVVSTCALFTSYNFFLSVLRIHCFIYFLQKMSLF 52


>AC024882-7|AAF60924.1|  285|Caenorhabditis elegans Hypothetical
           protein Y9C9A.12 protein.
          Length = 285

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -1

Query: 692 KTVTYQSTRIVFI*VQVALILRLFDNEAPSRNML---LNFSNDV 570
           KTV +QS   +F    +A IL +F+ +    N+L   LNF+N V
Sbjct: 227 KTVNFQSGMFIFEETDIADILEVFNPDYDDGNILPIYLNFNNSV 270


>U80842-3|AAB37947.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein48 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 536 VKNSLLETSVILFHPIIFFLKLYPYIALIFLHIMQ 432
           +KN+L   S+  +  I F +   P +ALIF+ ++Q
Sbjct: 119 IKNTLRRNSIPNWAYIAFIISTLPLVALIFISVLQ 153


>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 506 ILFHPIIFFLKLYPYIALIFLHIMQDSFLPPLLIIHCQ 393
           ILF   +F+  LY   ++  L+  +  F P LLII+C+
Sbjct: 13  ILFSQFVFYFNLYLLYSI--LYSKRIGFKPELLIIYCR 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,946,821
Number of Sequences: 27780
Number of extensions: 334900
Number of successful extensions: 841
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)