Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j13
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    24   1.7  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   2.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   3.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   8.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.8  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 273 CFQKYDRIYILTKIVQ*HDLSWE 205
           CFQ  DR+Y + + V   DL ++
Sbjct: 53  CFQTMDRLYFVMEYVNGGDLMYQ 75


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 561 LTAFSFCSCEKLLVGNKCNTISSHNLLFKIIP 466
           L  +  C  EK  V +K N    +NLL K+IP
Sbjct: 68  LKCYFNCVLEKFNVMDKKNGKIRYNLLKKVIP 99


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 631 YVFLTTKLPRETCS*IFPTTLYHFNCIFFLFL 536
           Y+ +  K    T + I PT L  F C+   +L
Sbjct: 226 YIIIRRKTLFYTVNLILPTVLISFLCVLVFYL 257


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 540 NKKKMQLK*YNVVGKI*EHVSR 605
           NKK + L+ YNVV K+ +++ +
Sbjct: 550 NKKGVSLRFYNVVYKLIDNIKK 571


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/25 (24%), Positives = 13/25 (52%)
 Frame = -1

Query: 230 YNDTTYHGKKYRNFLMYTFRLLFVE 156
           YN+  Y+   Y N+    + + ++E
Sbjct: 101 YNNYNYNNNNYNNYKKLYYNINYIE 125


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 272 ASKNTTGFIF*QRLYNDTTYHGKKYRNFLMYTFRLLFVEIKSTF 141
           AS+N   +      Y+D T++    R  L YT  L+   +  TF
Sbjct: 222 ASRNEEYYPCCTEPYSDITFNITMRRKTLFYTVNLIIPCVGITF 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,004
Number of Sequences: 438
Number of extensions: 4017
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)