Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j11
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    29   0.51 
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    27   3.6  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   4.7  

>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 19/88 (21%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
 Frame = +3

Query: 294 VNYLRDLSLLEMTFFIHL*IVLVVSRNGLDRFMNCNLTSTFYQILASV*NEIKTNHIYV- 470
           +  +  L  LE  FF+   I  + +  GLDR  N  L     +++ ++   +    ++V 
Sbjct: 119 IRNINHLKGLENLFFVQNRIRRIENLEGLDRLTNLELGGNKIRVIENLDTLVNLEKLWVG 178

Query: 471 SGTLRR*TQFPE*HEINLISIQTLLVSQ 554
              + +   F +  +++L+SIQ+  ++Q
Sbjct: 179 KNKITKFENFEKLQKLSLLSIQSNRITQ 206


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 130 YFAIQLDVLYEMNVKFRQS*IANELFYNEID 222
           + A Q+  LYE N         N LFY EID
Sbjct: 68  HVAAQIRKLYEQNSAIEDITFLNPLFYGEID 98


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 123 IRKVFIYKRYIYSNNDNHE 67
           + ++ +YK ++YSN D H+
Sbjct: 874 LNEITVYKAFLYSNTDKHK 892


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,847
Number of Sequences: 5004
Number of extensions: 48143
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)