Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j09
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    28   1.2  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    27   2.1  
SPBC336.10c |tif512||translation initiation factor|Schizosacchar...    27   2.1  
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos...    27   2.1  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    27   3.8  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    27   3.8  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   5.0  
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po...    26   5.0  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    25   8.7  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   8.7  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   8.7  

>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 190 FGMTNTRNVTNITVSSEDRAKFNRNKSKDSLELFEKTIMDLLYGEKWKERAEGYSFQKKE 369
           F M  ++N  N+  ++    ++ RN++ + L   E    DLL  E  K  + G S  KKE
Sbjct: 171 FVMEPSQNKGNVNDANFFEVEYARNENMNKLSSSELISDDLLEDEIMKPLSSGESLPKKE 230


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +3

Query: 510 QDHKRLHADCRECFR-DFCLWKCQRYL-PFASRLCAPFCANNSNATDTARK 656
           ++H R  A CR C R  +C  +CQ    P  SR C     +  N+   + K
Sbjct: 489 EEHSRQFAKCRRCRRTKYCSKECQHQAWPGHSRWCRVIHKDGRNSKRESSK 539


>SPBC336.10c |tif512||translation initiation
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 633 CYCSRRTEHIIWR-QTVNIVDISIDKNRESIHGSLHVIVCDL 511
           C   R+  H++ + +   IVD+S  K  +  H  +H++  D+
Sbjct: 24  CSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVALDI 65


>SPAC26H5.10c |tif51||translation initiation factor
           eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 633 CYCSRRTEHIIWR-QTVNIVDISIDKNRESIHGSLHVIVCDL 511
           C   R+  H++ + +   IVD+S  K  +  H  +H++  D+
Sbjct: 24  CSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHIVALDI 65


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 199 TNTRNVTNITVSSEDRAKFNRNKSKDSLELFEKTIMDLLYGEKWK 333
           ++T   ++    S+D    NRN+  D +E  E    DLL G+  K
Sbjct: 453 SDTDTDSDSLADSDDEIFLNRNQGIDEVEFDETKFYDLLKGKDGK 497


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 418 SGQVRRSELFFNRSAVHLPPSDFTPAGQNLLKITNDYMQTAVNAFAI 558
           S  +RRS L  NR +V    S     GQ+ +  +N  ++ A +AFA+
Sbjct: 254 SPMMRRSSLNSNRRSVESSSSAAFVEGQSFILDSNGAIEVANSAFAL 300


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 2/35 (5%)
 Frame = +1

Query: 505 LLKITNDYMQTAVNAF-AIF-VYGNVNDIYRLPPD 603
           +L ++N  + T+ +A  A+F  YGNV DI+ L PD
Sbjct: 1   MLYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPD 35


>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/71 (23%), Positives = 31/71 (43%)
 Frame = +3

Query: 378 GWTSSSRCLIAIPIGPSETLRIILQQKCGSSPSI*FYASRPESPQDHKRLHADCRECFRD 557
           GW   S  ++   +  ++     LQQ    + S+      PE  ++  RL    +E  +D
Sbjct: 74  GWLCESNNILVCDVCRNKINLTALQQVDAENDSL---NELPEKTKE--RLEVSLKEEHQD 128

Query: 558 FCLWKCQRYLP 590
            CLW+  ++ P
Sbjct: 129 NCLWRLHKFPP 139


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 280 LELFEKTIMDLLYGEKWKERAEGYSFQKK 366
           LE+ E  + D  Y +  K RAE + F+KK
Sbjct: 784 LEILEPKLFDSPYYKDSKHRAEYHEFRKK 812


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -2

Query: 600 WRQTVNIVDISIDKNRESIHGSLHVIVCDLEEILAGWRKIRWREM 466
           WR+ VN+ + ++ +N +      H + C L E++    +I W+E+
Sbjct: 629 WRR-VNLGERNVFRNLDYTKFEWHFVSCHLAEMIHFVIEISWQEL 672


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +1

Query: 157 NAHYEEQLKIIFGMTNTRNVTNITVSSEDRAKFNRNKSKDSLELFEKTIMDLL 315
           +AHYE    +   +++   +TN    +    K N    K SLE+  K I  ++
Sbjct: 728 SAHYENVFSLNLVISDAMKLTNNIADALKNNKVNIGTIKASLEVLVKCIAPII 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,034
Number of Sequences: 5004
Number of extensions: 67573
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)