Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j09
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062...    31   0.74 
02_01_0272 - 1816791-1816902,1817002-1817023,1817771-1817841,181...    31   0.74 
07_03_1374 + 26117560-26117672,26117761-26117831,26118389-261184...    30   2.2  
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396...    29   3.9  
02_01_0162 - 1126273-1126593,1126950-1127117,1127211-1127501,112...    28   6.9  
01_06_1714 - 39368509-39369153,39369607-39369850,39369995-393701...    28   6.9  
09_02_0321 - 7223393-7224751,7225971-7226063,7227801-7227947           28   9.1  

>07_03_0572 -
           19604643-19604745,19604947-19605629,19605786-19606284,
           19606370-19606878,19607110-19607148,19607347-19607411,
           19609081-19609201,19610229-19610315,19611096-19611179,
           19611925-19612175,19612869-19612962,19613043-19613284,
           19614187-19614505
          Length = 1031

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 106 FLKDIDKRCNEIKRISPNAHYEEQLKIIFGMTNTRNVTNITVSS 237
           F  + +K CN  +  +PN   E  L ++FG+TN  N      SS
Sbjct: 241 FSANPNKTCNFYRSWAPNTLNERMLSLVFGLTNQSNKPKALKSS 284


>02_01_0272 -
           1816791-1816902,1817002-1817023,1817771-1817841,
           1817951-1818063
          Length = 105

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 329 GKKELKGTPSRRKKLDRMDKFITMPYCN 412
           GK++ K  P  +K++D++D     P+CN
Sbjct: 2   GKRKSKAKPPPKKRMDKLDTVFCCPFCN 29


>07_03_1374 +
           26117560-26117672,26117761-26117831,26118389-26118410,
           26118510-26118573
          Length = 89

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 329 GKKELKGTPSRRKKLDRMDKFITMPYCN 412
           GK++    P  +K++D++D   + P+CN
Sbjct: 2   GKRKSAAKPPPKKRMDKLDTVFSCPFCN 29


>03_06_0157 -
           32039020-32039175,32039267-32039338,32039478-32039602,
           32039678-32040559,32040623-32040692,32041248-32041739,
           32041985-32042044,32042541-32042618,32043322-32044344
          Length = 985

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +1

Query: 574 VNDIYRLPPDYVLRSARTIAMLQIPLEKLVATWYVVKQDRPTSTISYRVLELYRPLFK 747
           V +I  LPP Y+L+  R  A  + P E     +  V +D P   +S R   LYR  +K
Sbjct: 722 VRNIKELPPHYILKRWRKDAQSESPRENY--GFEAVDED-PRFLLSKRYSMLYRTFYK 776


>02_01_0162 -
           1126273-1126593,1126950-1127117,1127211-1127501,
           1127688-1127763,1127841-1127886,1128006-1128072,
           1128162-1128234,1128321-1128561,1128669-1128822,
           1128915-1129042,1129481-1129535,1129629-1129838
          Length = 609

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +1

Query: 97  SFTFLKDIDKRCNEIKRISPNAHYEEQLKIIFGMTNTRNVTNITVSSEDRAKFNRN 264
           S TFL D + RCN I +++ +   EE++ ++  + +   + ++   S DR     N
Sbjct: 116 SQTFLMDRETRCNAIPQLANHFSKEEEV-VVDALLSLSQIPHLCELSSDRGMAEDN 170


>01_06_1714 -
           39368509-39369153,39369607-39369850,39369995-39370191,
           39370607-39370708,39370826-39371026,39371138-39371381,
           39371813-39371983,39372450-39372751
          Length = 701

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 313 LYGEKWKERAEGYSFQKKEVGSDGQVHHDALLQYP 417
           +YG  W     GYSF   EVG   +++ D ++ YP
Sbjct: 221 IYGMGWISEMYGYSFGAAEVGLRHKINDDIMI-YP 254


>09_02_0321 - 7223393-7224751,7225971-7226063,7227801-7227947
          Length = 532

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 391 HHDALLQYPSGQVR--RSELFFNRSAVHLPPSDFTPAGQ 501
           HH AL  YP G+V   +    ++ S++  PP   +P+GQ
Sbjct: 213 HHHALGHYPCGRVMPLQQHCQYSSSSMLSPPQIASPSGQ 251


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,541,860
Number of Sequences: 37544
Number of extensions: 410313
Number of successful extensions: 1014
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)