Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j09
         (748 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ355152-1|ABC75877.1|  172|Homo sapiens R-spondin family member...    31   4.4  
AL050325-3|CAM28322.1|  172|Homo sapiens R-spondin family, membe...    31   4.4  
AL050325-2|CAB65783.4|  234|Homo sapiens R-spondin family, membe...    31   4.4  

>DQ355152-1|ABC75877.1|  172|Homo sapiens R-spondin family member 4
           variant protein.
          Length = 172

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 483 FYASRPESPQDHKRLHADCRECF-RDFCLWKCQRYLPFASRLCAPFCANNSNATDTARK 656
           ++  R +     K+  A C  CF +DFC+ +C+R        C P C   + A    R+
Sbjct: 77  YFGIRGQEVNRCKKCGATCESCFSQDFCI-RCKRQFYLYKGKCLPTCPPGTLAHQNTRE 134


>AL050325-3|CAM28322.1|  172|Homo sapiens R-spondin family, member 4
           protein.
          Length = 172

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 483 FYASRPESPQDHKRLHADCRECF-RDFCLWKCQRYLPFASRLCAPFCANNSNATDTARK 656
           ++  R +     K+  A C  CF +DFC+ +C+R        C P C   + A    R+
Sbjct: 77  YFGIRGQEVNRCKKCGATCESCFSQDFCI-RCKRQFYLYKGKCLPTCPPGTLAHQNTRE 134


>AL050325-2|CAB65783.4|  234|Homo sapiens R-spondin family, member 4
           protein.
          Length = 234

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 483 FYASRPESPQDHKRLHADCRECF-RDFCLWKCQRYLPFASRLCAPFCANNSNATDTARK 656
           ++  R +     K+  A C  CF +DFC+ +C+R        C P C   + A    R+
Sbjct: 77  YFGIRGQEVNRCKKCGATCESCFSQDFCI-RCKRQFYLYKGKCLPTCPPGTLAHQNTRE 134


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,862,433
Number of Sequences: 237096
Number of extensions: 2230613
Number of successful extensions: 4567
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4567
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8959138240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)