Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j09
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025453-4|ABC48262.1|  905|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF025453-3|AAM98053.2|  828|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF016673-4|AAB66125.2|  743|Caenorhabditis elegans Hypothetical ...    29   4.6  
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z35719-2|CAA84799.2|  715|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate rece...    28   6.1  
AF318608-1|AAK01096.1|  409|Caenorhabditis elegans ionotropic gl...    28   6.1  
AL132943-2|CAC14392.1|  367|Caenorhabditis elegans Hypothetical ...    28   8.1  

>AF025453-4|ABC48262.1|  905|Caenorhabditis elegans Hypothetical
           protein C08F1.5b protein.
          Length = 905

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 130 CNEIKRISPNAHYEEQLKIIFGMT--NTRNVTNITVSSEDRAKFNRNKSKDSLELF 291
           C E  R S NA +E  +  +F +   N RN+     S++    F+RN  K+ +  F
Sbjct: 408 CEEGSRKSDNAVWEIIVNCVFNLVSANGRNLMRRVESAKSDTVFHRNNEKEGITKF 463


>AF025453-3|AAM98053.2|  828|Caenorhabditis elegans Hypothetical
           protein C08F1.5a protein.
          Length = 828

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +1

Query: 130 CNEIKRISPNAHYEEQLKIIFGMT--NTRNVTNITVSSEDRAKFNRNKSKDSLELF 291
           C E  R S NA +E  +  +F +   N RN+     S++    F+RN  K+ +  F
Sbjct: 331 CEEGSRKSDNAVWEIIVNCVFNLVSANGRNLMRRVESAKSDTVFHRNNEKEGITKF 386


>AF016673-4|AAB66125.2|  743|Caenorhabditis elegans Hypothetical
           protein T06D4.3 protein.
          Length = 743

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 145 RISPNAHYEEQLKIIFGMTNTRNVTNITVSSEDRAKFNRNKSKDSLELFEKTIMDLL 315
           R+  N  +EE  ++IF    +     +   + D +KFN N  K  +  F   I D+L
Sbjct: 176 RVGDNDDHEEAYQLIFNKIQSIGSCPLLNGTWDASKFNLNGIKALIIFFYNIITDML 232


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
           protein F53B6.2a protein.
          Length = 1045

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +3

Query: 369 SWIGWTSSSRCLIAIPIGPSETLRIILQQKCGSSPSI*FYASRPESPQDHKRLHAD 536
           SW  W+  S C      G S  LR  L  KC S  S+ F     ++ +   RL  D
Sbjct: 25  SWAAWSPWSSCTKTCGGGVSRQLRRCLTSKC-SGESVRFKVCAQKTCESKSRLARD 79


>Z35719-2|CAA84799.2|  715|Caenorhabditis elegans Hypothetical
           protein F17C8.3 protein.
          Length = 715

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = -2

Query: 675 IPSSNEFFERYL*HCYCSRRTEHI------IWRQTVNIV 577
           +PS  E  ++Y  H Y ++  EH+      IW+Q  N++
Sbjct: 337 LPSREEKIQQYAYHLYATQAEEHVTSDDEEIWKQNYNLI 375


>U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 4 protein.
          Length = 951

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 268 SKDSLELFEKTIMDLLYGEKWKERAEGYS 354
           S+  L+L E+TI++ L  + W++R EG S
Sbjct: 754 SRTVLQLQERTILEALKNKWWRDRREGPS 782


>AF318608-1|AAK01096.1|  409|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-4 protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +1

Query: 268 SKDSLELFEKTIMDLLYGEKWKERAEGYS 354
           S+  L+L E+TI++ L  + W++R EG S
Sbjct: 343 SRTVLQLQERTILEALKNKWWRDRREGPS 371


>AL132943-2|CAC14392.1|  367|Caenorhabditis elegans Hypothetical
           protein Y116F11B.5 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = +1

Query: 541 VNAFAIFVYGNVNDIYRLPPDYVLRSARTIAMLQIPLEKLVATWYVVKQDRPTSTISYRV 720
           ++ F   VY     I++  P  +L  +  + ++++   K   TW    QDR T  + Y  
Sbjct: 221 IDDFYWIVYYIYAVIFQFIPSILLPISTVLLIIELKKNKKTKTWTSKSQDRSTKLVVYMT 280

Query: 721 L 723
           +
Sbjct: 281 I 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,371,513
Number of Sequences: 27780
Number of extensions: 385070
Number of successful extensions: 1127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)