Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2j08
(624 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P36958 Cluster: DNA-directed RNA polymerase II subunit ... 237 2e-61
UniRef50_P36954 Cluster: DNA-directed RNA polymerase II subunit ... 201 9e-51
UniRef50_Q5DAX2 Cluster: SJCHGC05867 protein; n=1; Schistosoma j... 182 5e-45
UniRef50_Q8L5V0 Cluster: RNA Polymerase II subunit 14.5 kD, puta... 153 3e-36
UniRef50_Q6QAQ8 Cluster: DNA-directed RNA polymerase II; n=1; Su... 151 2e-35
UniRef50_Q55GG8 Cluster: DNA-directed RNA polymerase subunit; n=... 132 7e-30
UniRef50_P27999 Cluster: DNA-directed RNA polymerase II subunit ... 125 1e-27
UniRef50_Q4X1W6 Cluster: DNA-directed RNA polymerase subunit; n=... 120 4e-26
UniRef50_A4RSQ4 Cluster: DNA-directed RNA polymerase II subunit ... 119 7e-26
UniRef50_Q8GSD5 Cluster: Putative RNA Polymerase II subunit 14.5... 116 6e-25
UniRef50_Q55M04 Cluster: DNA-directed RNA polymerase subunit; n=... 110 2e-23
UniRef50_Q6C1C2 Cluster: DNA-directed RNA polymerase subunit; n=... 104 2e-21
UniRef50_A4R9M8 Cluster: Putative uncharacterized protein; n=1; ... 100 3e-20
UniRef50_Q7RSD7 Cluster: DNA-directed RNA polymerase ii 15.1 kDa... 93 4e-18
UniRef50_A7AUU3 Cluster: DNA-directed RNA polymerase 2 subunit, ... 92 9e-18
UniRef50_Q8I241 Cluster: DNA-directed RNA polymerase 2 subunit, ... 92 1e-17
UniRef50_Q4UDQ7 Cluster: DNA-directed RNA polymerase 2 subunit, ... 91 1e-17
UniRef50_Q8SQU1 Cluster: DNA-directed RNA polymerase II subunit ... 89 6e-17
UniRef50_Q5CPB7 Cluster: DNA-directed RNA polymerase 2 subunit; ... 88 2e-16
UniRef50_A6RCK2 Cluster: Predicted protein; n=1; Ajellomyces cap... 83 7e-15
UniRef50_Q0C9E4 Cluster: Putative uncharacterized protein; n=2; ... 76 8e-13
UniRef50_Q4Q8Q8 Cluster: DNA-direcetd RNA polymerase II, subunit... 75 1e-12
UniRef50_Q8MPH6 Cluster: DNA directed polymerase II subunit 9; n... 73 6e-12
UniRef50_A7EUD0 Cluster: Putative uncharacterized protein; n=1; ... 73 7e-12
UniRef50_Q7SBJ7 Cluster: Putative uncharacterized protein NCU085... 72 1e-11
UniRef50_Q0U3A2 Cluster: Predicted protein; n=1; Phaeosphaeria n... 67 4e-10
UniRef50_Q9YEZ3 Cluster: Archaeal transcription factor S; n=2; T... 66 9e-10
UniRef50_Q58548 Cluster: DNA-directed RNA polymerase subunit M; ... 65 1e-09
UniRef50_Q07271 Cluster: DNA-directed RNA polymerase subunit M; ... 64 3e-09
UniRef50_O96159 Cluster: Transcription factor, putative; n=5; Pl... 62 1e-08
UniRef50_O27369 Cluster: DNA-directed RNA polymerase subunit M; ... 62 1e-08
UniRef50_Q04307 Cluster: DNA-directed RNA polymerase III subunit... 62 1e-08
UniRef50_A7ASV0 Cluster: Transcription factor S-II protein, puta... 62 1e-08
UniRef50_Q8ZTX9 Cluster: DNA-directed RNA polymerase subunit M; ... 62 1e-08
UniRef50_UPI0000498537 Cluster: DNA-directed RNA polymerase II s... 60 3e-08
UniRef50_Q5KEF1 Cluster: RNA polymerase III smallest subunit, pu... 59 1e-07
UniRef50_A7D318 Cluster: Transcription factor TFIIS; n=1; Haloru... 59 1e-07
UniRef50_Q15ES4 Cluster: RNA polymerase III subunit C11-like pro... 58 2e-07
UniRef50_A6SDC8 Cluster: Putative uncharacterized protein; n=2; ... 58 2e-07
UniRef50_Q74N12 Cluster: NEQ377; n=1; Nanoarchaeum equitans|Rep:... 57 3e-07
UniRef50_Q9P9I8 Cluster: Archaeal transcription factor S; n=2; M... 56 5e-07
UniRef50_Q97AQ6 Cluster: Transcription factor [TFIIS/RPB9]; n=5;... 56 7e-07
UniRef50_O13896 Cluster: DNA-directed RNA polymerase III subunit... 56 9e-07
UniRef50_Q5V5C5 Cluster: DNA-directed RNA-polymerase subunit M; ... 55 2e-06
UniRef50_Q0W2J5 Cluster: Archaeal transcription factor S; n=4; E... 55 2e-06
UniRef50_Q8PX24 Cluster: DNA-directed RNA polymerase subunit M; ... 54 2e-06
UniRef50_A3LW94 Cluster: DNA-directed RNA polymerase subunit; n=... 53 5e-06
UniRef50_Q9Y2Y1 Cluster: DNA-directed RNA polymerase III subunit... 53 5e-06
UniRef50_Q9LU97 Cluster: Similarity to transcription-associated ... 52 8e-06
UniRef50_A0E7M3 Cluster: Chromosome undetermined scaffold_81, wh... 52 8e-06
UniRef50_A0DZF5 Cluster: Chromosome undetermined scaffold_70, wh... 52 8e-06
UniRef50_A2E2P5 Cluster: DNA-directed RNA polymerase II 15.1 kDa... 52 1e-05
UniRef50_Q9N4B7 Cluster: DNA-directed RNA polymerase subunit; n=... 52 1e-05
UniRef50_Q0IR54 Cluster: Os11g0676800 protein; n=1; Oryza sativa... 51 3e-05
UniRef50_Q5CYY8 Cluster: RNA polymerase III subunit C11; n=1; Cr... 50 5e-05
UniRef50_A3DM83 Cluster: Transcription factor S; n=1; Staphyloth... 50 5e-05
UniRef50_UPI00004998C5 Cluster: RNA polymerase III subunit; n=1;... 50 6e-05
UniRef50_O17587 Cluster: Putative uncharacterized protein; n=2; ... 49 1e-04
UniRef50_Q5V537 Cluster: DNA-directed RNA-polymerase subunit M; ... 48 1e-04
UniRef50_A0RXH6 Cluster: DNA-directed RNA polymerase, subunit M/... 48 1e-04
UniRef50_Q9LNT2 Cluster: T20H2.16 protein; n=1; Arabidopsis thal... 48 2e-04
UniRef50_Q245U9 Cluster: F-box domain containing protein; n=1; T... 48 2e-04
UniRef50_UPI00006CB60F Cluster: hypothetical protein TTHERM_0044... 48 2e-04
UniRef50_A2ZGV6 Cluster: Putative uncharacterized protein; n=1; ... 48 2e-04
UniRef50_A7TNI5 Cluster: Putative uncharacterized protein; n=1; ... 48 2e-04
UniRef50_Q2NEY4 Cluster: RpoM2; n=2; Methanobacteriaceae|Rep: Rp... 48 2e-04
UniRef50_A1RXU9 Cluster: Transcription termination factor Tfs; n... 47 3e-04
UniRef50_Q9LNK0 Cluster: DNA-directed RNA polymerase subunit; n=... 47 4e-04
UniRef50_Q6EU09 Cluster: DNA-directed RNA polymerase subunit; n=... 47 4e-04
UniRef50_A4RUS3 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 47 4e-04
UniRef50_A2RAZ1 Cluster: Complex: hRPC11 is a small; n=5; Euroti... 46 6e-04
UniRef50_Q5CUJ8 Cluster: Putative uncharacterized protein; n=1; ... 46 7e-04
UniRef50_Q4P1X5 Cluster: Putative uncharacterized protein; n=1; ... 46 7e-04
UniRef50_Q9P1U0 Cluster: DNA-directed RNA polymerase I subunit R... 46 7e-04
UniRef50_A2EBM6 Cluster: Putative uncharacterized protein; n=1; ... 46 0.001
UniRef50_Q5YFI0 Cluster: Transcription elongation factor TFIIS; ... 45 0.001
UniRef50_A7DQB3 Cluster: Transcription termination factor Tfs; n... 45 0.001
UniRef50_Q01C33 Cluster: RNA polymerase III subunit C11; n=2; Os... 44 0.002
UniRef50_Q4N8B9 Cluster: Transcription elongation factor SII, pu... 44 0.003
UniRef50_Q4DRW2 Cluster: Transcription elongation factor, putati... 44 0.003
UniRef50_Q7QY69 Cluster: GLP_572_32225_32536; n=1; Giardia lambl... 44 0.004
UniRef50_Q9ZVH8 Cluster: Putative elongation factor; n=5; Magnol... 43 0.005
UniRef50_Q7QXB3 Cluster: GLP_741_50228_49188; n=1; Giardia lambl... 43 0.005
UniRef50_Q4Q3Q4 Cluster: Transcription elongation factor-like pr... 43 0.005
UniRef50_Q6GZP4 Cluster: Transcription elongation factor SII; n=... 43 0.007
UniRef50_A4S3C9 Cluster: Predicted protein; n=2; Ostreococcus|Re... 43 0.007
UniRef50_A3LRC5 Cluster: Predicted protein; n=5; Saccharomycetal... 43 0.007
UniRef50_A7AWE5 Cluster: Transcription factor S-II (TFIIS)and tr... 42 0.009
UniRef50_A0CQT2 Cluster: Chromosome undetermined scaffold_24, wh... 42 0.009
UniRef50_Q2FPF9 Cluster: Transcription factor S; n=3; Euryarchae... 42 0.009
UniRef50_Q0UVI1 Cluster: Predicted protein; n=1; Phaeosphaeria n... 42 0.012
UniRef50_P07273 Cluster: Transcription elongation factor S-II; n... 42 0.012
UniRef50_Q0D7N2 Cluster: Os07g0229700 protein; n=4; Magnoliophyt... 42 0.016
UniRef50_A7Q3Y6 Cluster: Chromosome chr13 scaffold_48, whole gen... 42 0.016
UniRef50_Q54YF5 Cluster: RNA polymerase I subunit; n=1; Dictyost... 42 0.016
UniRef50_Q4UH96 Cluster: Transcription elongation factor, putati... 42 0.016
UniRef50_A0B7Y7 Cluster: Transcription factor TFIIS; n=1; Methan... 42 0.016
UniRef50_UPI0000E47C8A Cluster: PREDICTED: similar to ENSANGP000... 41 0.021
UniRef50_P49373 Cluster: Transcription elongation factor S-II; n... 41 0.021
UniRef50_Q4T1I2 Cluster: Chromosome undetermined SCAF10575, whol... 41 0.028
UniRef50_Q9YPH8 Cluster: Transcription elongation factor SII; n=... 41 0.028
UniRef50_Q197A5 Cluster: Putative uncharacterized protein; n=1; ... 41 0.028
UniRef50_A6RN27 Cluster: Transcription elongation factor S-II; n... 41 0.028
UniRef50_P23193 Cluster: Transcription elongation factor A prote... 41 0.028
UniRef50_Q9VD81 Cluster: DNA-directed RNA polymerase subunit; n=... 40 0.037
UniRef50_Q7QQW3 Cluster: DNA-directed RNA polymerase subunit; n=... 40 0.037
UniRef50_Q586X9 Cluster: Transcription elongation factor S-II, p... 40 0.037
UniRef50_Q1JT63 Cluster: Transcription elongation factor s-II, p... 40 0.037
UniRef50_A5JZL5 Cluster: Transcription elongation factor, putati... 40 0.037
UniRef50_Q22CT1 Cluster: Transcription factor S-II; n=1; Tetrahy... 40 0.048
UniRef50_Q6C6I8 Cluster: Similar to DEHA0C15686g Debaryomyces ha... 40 0.048
UniRef50_Q2U4B9 Cluster: Transcription elongation factor TFIIS/C... 40 0.048
UniRef50_Q8SSB3 Cluster: DNA-DIRECTED RNA POLYMERASE III 12.5kDa... 40 0.064
UniRef50_O75764 Cluster: Transcription elongation factor A prote... 40 0.064
UniRef50_Q15560 Cluster: Transcription elongation factor A prote... 40 0.064
UniRef50_Q98TK0 Cluster: RNA polymerase III smallest subunit; n=... 39 0.085
UniRef50_Q6P0U5 Cluster: Zgc:77732; n=4; Clupeocephala|Rep: Zgc:... 39 0.085
UniRef50_Q4TIF2 Cluster: Chromosome undetermined SCAF2195, whole... 39 0.085
UniRef50_Q0DP65 Cluster: Os03g0711700 protein; n=4; Oryza sativa... 39 0.085
UniRef50_Q5CVE1 Cluster: Transcription elongation factor TFIIS; ... 39 0.085
UniRef50_Q4CXN7 Cluster: Transcription elongation factor S-II, p... 39 0.085
UniRef50_O94703 Cluster: DNA-directed RNA polymerase I subunit R... 39 0.085
UniRef50_UPI00005A4643 Cluster: PREDICTED: similar to Transcript... 39 0.11
UniRef50_Q9DGD2 Cluster: Transcription elongation factor XSII-K1... 39 0.11
UniRef50_Q9GZ09 Cluster: Transcription elongation factor TFIIS; ... 38 0.15
UniRef50_A4R9N1 Cluster: Predicted protein; n=1; Magnaporthe gri... 38 0.15
UniRef50_A0EDT1 Cluster: Chromosome undetermined scaffold_90, wh... 38 0.20
UniRef50_A5UYN5 Cluster: Protein kinase; n=1; Roseiflexus sp. RS... 37 0.34
UniRef50_Q4N7G2 Cluster: Putative uncharacterized protein; n=2; ... 37 0.34
UniRef50_UPI0000499ED2 Cluster: hypothetical protein 230.t00020;... 37 0.45
UniRef50_A2EHZ7 Cluster: Putative uncharacterized protein; n=1; ... 37 0.45
UniRef50_P52652 Cluster: Putative transcription elongation facto... 37 0.45
UniRef50_P32529 Cluster: DNA-directed RNA polymerase I subunit R... 37 0.45
UniRef50_Q5UQS8 Cluster: TFII-like transcription factor; n=1; Ac... 36 0.60
UniRef50_Q4A328 Cluster: Transcription factor S-II (TFIIS) famil... 36 0.79
UniRef50_Q4Q100 Cluster: Transcription factor S-II-like protein;... 36 0.79
UniRef50_A1CED1 Cluster: DNA-directed RNA polymerase subunit; n=... 36 0.79
UniRef50_UPI0000161EFD Cluster: Transcription factor SII homolog... 35 1.4
UniRef50_Q2P9W0 Cluster: RNA polymerase I subunit RPA12; n=2; Tr... 35 1.4
UniRef50_A7ARU9 Cluster: Putative uncharacterized protein; n=1; ... 35 1.4
UniRef50_Q2UH76 Cluster: Predicted protein; n=1; Aspergillus ory... 35 1.4
UniRef50_UPI00006CA3DD Cluster: Response regulator receiver doma... 35 1.8
UniRef50_UPI000049984E Cluster: DNA-directed RNA polymerase I su... 35 1.8
UniRef50_Q91FH5 Cluster: 349L; n=1; Invertebrate iridescent viru... 35 1.8
UniRef50_Q06VI2 Cluster: Putative uncharacterized protein; n=1; ... 35 1.8
UniRef50_Q4QDH9 Cluster: RNA polymerase III C11 subunit, putativ... 35 1.8
UniRef50_Q0IWP7 Cluster: Os10g0496000 protein; n=7; Viridiplanta... 34 3.2
UniRef50_Q9W137 Cluster: CG4707-PA; n=2; Sophophora|Rep: CG4707-... 34 3.2
UniRef50_Q2RS91 Cluster: Putative uncharacterized protein; n=1; ... 33 4.2
UniRef50_Q8I2A5 Cluster: Putative uncharacterized protein PFA017... 33 4.2
UniRef50_Q7RCT6 Cluster: Putative transcription factor; n=2; Pla... 33 4.2
UniRef50_Q4N3V9 Cluster: Putative uncharacterized protein; n=1; ... 33 4.2
UniRef50_Q4DDP9 Cluster: DNA-directed RNA polymerase, putative; ... 33 4.2
UniRef50_P27948 Cluster: Transcription factor S-II-related prote... 33 4.2
UniRef50_Q8BZN1 Cluster: Adult male diencephalon cDNA, RIKEN ful... 33 5.6
UniRef50_Q22LQ6 Cluster: Cation channel family protein; n=1; Tet... 33 5.6
UniRef50_Q22BS3 Cluster: Putative uncharacterized protein; n=2; ... 33 5.6
UniRef50_A0DNJ2 Cluster: Chromosome undetermined scaffold_58, wh... 33 5.6
UniRef50_Q54YG9 Cluster: RNA polymerase II elongation factor; n=... 33 7.3
UniRef50_Q8SS71 Cluster: TRANSCRIPTION ELONGATION FACTOR SII; n=... 33 7.3
UniRef50_Q1QVV2 Cluster: ATPase-like protein; n=1; Chromohalobac... 32 9.7
UniRef50_Q5UQ21 Cluster: Uncharacterized protein L208; n=1; Acan... 32 9.7
UniRef50_Q06AK7 Cluster: DNA topoisomerase 1; n=69; Firmicutes|R... 32 9.7
>UniRef50_P36958 Cluster: DNA-directed RNA polymerase II subunit
RPB9; n=9; Coelomata|Rep: DNA-directed RNA polymerase II
subunit RPB9 - Drosophila melanogaster (Fruit fly)
Length = 129
Score = 237 bits (580), Expect = 2e-61
Identities = 100/118 (84%), Positives = 110/118 (93%), Gaps = 2/118 (1%)
Frame = +1
Query: 214 GPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTH 393
GPG+VGI+FCQECNNMLYP+EDK NK+LLYACRNCDYKQ ADSNC+YVNKIMHE+DELTH
Sbjct: 12 GPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTH 71
Query: 394 INPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCT--SCKHRWTE 561
I PDV+SDPTLPRT+DH CPKC+HREAVFFQ QTRRAEEEMRLYYVCT +C HRWTE
Sbjct: 72 IVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>UniRef50_P36954 Cluster: DNA-directed RNA polymerase II subunit
RPB9; n=18; Eumetazoa|Rep: DNA-directed RNA polymerase
II subunit RPB9 - Homo sapiens (Human)
Length = 125
Score = 201 bits (491), Expect = 9e-51
Identities = 85/117 (72%), Positives = 99/117 (84%), Gaps = 2/117 (1%)
Frame = +1
Query: 217 PGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHI 396
PG+VGI+FCQECNNMLYP+EDK N++LLYACRNCDY+Q AD++C+YVNKI HEVDELT I
Sbjct: 9 PGFVGIRFCQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDELTQI 68
Query: 397 NPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTS--CKHRWTE 561
DV DPTLPRT+DH C KC H+EAVFFQ + RAE+ MRLYYVCT+ C HRWTE
Sbjct: 69 IADVSQDPTLPRTEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>UniRef50_Q5DAX2 Cluster: SJCHGC05867 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC05867 protein - Schistosoma
japonicum (Blood fluke)
Length = 126
Score = 182 bits (444), Expect = 5e-45
Identities = 79/115 (68%), Positives = 91/115 (79%), Gaps = 2/115 (1%)
Frame = +1
Query: 223 YVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINP 402
+VGI FC ECNNMLYP+EDK K L YACRNCDY Q AD+ CVY+NK+ EVDEL I P
Sbjct: 12 HVGILFCSECNNMLYPKEDKRTKTLFYACRNCDYSQEADNPCVYINKLEQEVDELALIVP 71
Query: 403 DVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTS--CKHRWTE 561
DVV DPTLPRT+DH+C +C +EAVFFQ QT +AEE MRLYYVCT+ C H+WTE
Sbjct: 72 DVVHDPTLPRTEDHICRRCGKQEAVFFQSQTLKAEENMRLYYVCTNVECLHKWTE 126
>UniRef50_Q8L5V0 Cluster: RNA Polymerase II subunit 14.5 kD,
putative; n=9; Magnoliophyta|Rep: RNA Polymerase II
subunit 14.5 kD, putative - Arabidopsis thaliana
(Mouse-ear cress)
Length = 114
Score = 153 bits (371), Expect = 3e-36
Identities = 67/112 (59%), Positives = 82/112 (73%), Gaps = 2/112 (1%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVV 411
++FC+ECNN+LYP+EDK +LLYACRNCD+++ AD+NCVY N++ H V E T I DV
Sbjct: 4 MKFCRECNNILYPKEDKEQSILLYACRNCDHQEAADNNCVYRNEVHHSVSEQTQILSDVA 63
Query: 412 SDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVC--TSCKHRWTE 561
SDPTLPRTK C KC H EAVFFQ T R EE M L++VC +C HRW E
Sbjct: 64 SDPTLPRTKAVRCAKCQHGEAVFFQA-TARGEEGMTLFFVCCNPNCSHRWRE 114
>UniRef50_Q6QAQ8 Cluster: DNA-directed RNA polymerase II; n=1; Sus
scrofa|Rep: DNA-directed RNA polymerase II - Sus scrofa
(Pig)
Length = 105
Score = 151 bits (365), Expect = 2e-35
Identities = 67/105 (63%), Positives = 79/105 (75%), Gaps = 2/105 (1%)
Frame = +1
Query: 253 NNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSDPTLPR 432
NNMLYP+EDK N++LL RNCDY+Q D++C+YVNKI EV ELT I DV DPTLPR
Sbjct: 1 NNMLYPKEDKENRILLSVSRNCDYQQEGDNSCIYVNKITPEVGELTQIIADVSQDPTLPR 60
Query: 433 TKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTS--CKHRWTE 561
+DH C K H+EAVFFQ + RAE+ MRLYYVCT+ C HRWTE
Sbjct: 61 NEDHPCQKRGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 105
>UniRef50_Q55GG8 Cluster: DNA-directed RNA polymerase subunit; n=1;
Dictyostelium discoideum AX4|Rep: DNA-directed RNA
polymerase subunit - Dictyostelium discoideum AX4
Length = 112
Score = 132 bits (319), Expect = 7e-30
Identities = 61/102 (59%), Positives = 69/102 (67%)
Frame = +1
Query: 253 NNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSDPTLPR 432
NNMLYP+ DK NK LL ACR CD+K+ A +NCVY N+I H V E T I+ D+ SDPTLPR
Sbjct: 8 NNMLYPKADKANKTLLLACRICDHKEEATNNCVYRNEIRHSVMEKTQISQDIASDPTLPR 67
Query: 433 TKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWT 558
TK CP C REA FFQ T A M L+YVC SC RWT
Sbjct: 68 TKAAKCPSCGGREAAFFQSMT--AANGMTLFYVCASCGERWT 107
>UniRef50_P27999 Cluster: DNA-directed RNA polymerase II subunit
RPB9; n=8; Ascomycota|Rep: DNA-directed RNA polymerase
II subunit RPB9 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 122
Score = 125 bits (301), Expect = 1e-27
Identities = 55/108 (50%), Positives = 73/108 (67%)
Frame = +1
Query: 235 QFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVS 414
+FC++CNNMLYPREDK N LL+ CR C Y + A S VY ++++ + E + D+ S
Sbjct: 5 RFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAGSPLVYRHELITNIGETAGVVQDIGS 64
Query: 415 DPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWT 558
DPTLPR+ D CPKC+ RE VFFQ Q RR + M L++VC SC H +T
Sbjct: 65 DPTLPRS-DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFT 111
>UniRef50_Q4X1W6 Cluster: DNA-directed RNA polymerase subunit; n=9;
Ascomycota|Rep: DNA-directed RNA polymerase subunit -
Aspergillus fumigatus (Sartorya fumigata)
Length = 128
Score = 120 bits (288), Expect = 4e-26
Identities = 52/106 (49%), Positives = 70/106 (66%)
Frame = +1
Query: 226 VGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPD 405
+ +FC+EC+N+LYP+ED+ N L++ CR C + A S CVY NK+ +V + + D
Sbjct: 19 IHFRFCRECSNLLYPKEDRVNNRLMFTCRTCHVGEPATSYCVYQNKLNSQVGDTAGVTQD 78
Query: 406 VVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSC 543
V SDPTLPR+ + CP C EAVFFQ Q R AE M+LYYVC +C
Sbjct: 79 VGSDPTLPRS-NKPCPSCGEAEAVFFQSQQRSAETGMKLYYVCCAC 123
>UniRef50_A4RSQ4 Cluster: DNA-directed RNA polymerase II subunit 9,
probable; n=1; Ostreococcus lucimarinus CCE9901|Rep:
DNA-directed RNA polymerase II subunit 9, probable -
Ostreococcus lucimarinus CCE9901
Length = 124
Score = 119 bits (286), Expect = 7e-26
Identities = 54/122 (44%), Positives = 75/122 (61%)
Frame = +1
Query: 196 LSRKDGGPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHE 375
++ D G V ++FC N++LYP+ED+ NK L+Y CRNCDY A NCV+ I H
Sbjct: 1 MAGSDTHSGAVPLRFCPNSNDLLYPKEDRVNKKLVYFCRNCDYTIAATENCVHRRTIFHS 60
Query: 376 VDELTHINPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
E+T + DV +DPTLPR+KD C C+ REAVFF T E M L++ C +C ++W
Sbjct: 61 ASEITAVIHDVRTDPTLPRSKDVQCSLCDAREAVFFSQTT---TEGMSLFFQCINCGNKW 117
Query: 556 TE 561
+
Sbjct: 118 KD 119
>UniRef50_Q8GSD5 Cluster: Putative RNA Polymerase II subunit 14.5
kD; n=1; Oryza sativa (japonica cultivar-group)|Rep:
Putative RNA Polymerase II subunit 14.5 kD - Oryza
sativa subsp. japonica (Rice)
Length = 116
Score = 116 bits (278), Expect = 6e-25
Identities = 51/112 (45%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVV 411
++FC EC+NMLYPREDK LLYAC +C++++ A CVY + E I D
Sbjct: 6 LKFCGECSNMLYPREDKETHTLLYACNSCEHQEPATDTCVYKRVLRKPAGEPKDILKDAA 65
Query: 412 SDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVC--TSCKHRWTE 561
+DPTLPRT+ C C H EA FFQ T + E+ + LY++C SC HRW +
Sbjct: 66 TDPTLPRTRSIKCYNCGHPEAAFFQAPT-KGEKGLTLYFICCNPSCGHRWRD 116
>UniRef50_Q55M04 Cluster: DNA-directed RNA polymerase subunit; n=1;
Filobasidiella neoformans|Rep: DNA-directed RNA
polymerase subunit - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 123
Score = 110 bits (265), Expect = 2e-23
Identities = 52/111 (46%), Positives = 68/111 (61%), Gaps = 5/111 (4%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLAD-----SNCVYVNKIMHEVDELTHI 396
++FC ECNN+LYP+ D N KVLLY CRNC+Y + A + CVY + ++ E
Sbjct: 4 LKFCGECNNLLYPKSDNNAKVLLYQCRNCNYTENATVEPGMAGCVYKHDLLTVAREQPGE 63
Query: 397 NPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKH 549
D+ +DPTL R+ CP C+H AVFFQ Q RR M L+Y CT+CKH
Sbjct: 64 TKDLDTDPTLQRSAIE-CPACHHHGAVFFQDQGRRITTNMTLFYYCTNCKH 113
>UniRef50_Q6C1C2 Cluster: DNA-directed RNA polymerase subunit; n=1;
Yarrowia lipolytica|Rep: DNA-directed RNA polymerase
subunit - Yarrowia lipolytica (Candida lipolytica)
Length = 100
Score = 104 bits (250), Expect = 2e-21
Identities = 43/97 (44%), Positives = 66/97 (68%)
Frame = +1
Query: 259 MLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSDPTLPRTK 438
MLYPREDK ++ LL+ACRNC Y + A + V+ ++++ ++E + + +DPTLPR+
Sbjct: 1 MLYPREDKEDRKLLFACRNCPYTEFASTPLVFKHQLITNIEETAGVTTGIGADPTLPRS- 59
Query: 439 DHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKH 549
D CPKC+ + VFFQ Q +RAE M L++VC +C +
Sbjct: 60 DKECPKCHEHDVVFFQSQQKRAETTMILFFVCNNCNN 96
>UniRef50_A4R9M8 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 131
Score = 100 bits (239), Expect = 3e-20
Identities = 52/130 (40%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Frame = +1
Query: 184 SAISLSRKDGGPGY----VGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCV 351
S +S S +DG + V QFC EC+NMLYP+ED+ + L + CR C Y A + CV
Sbjct: 3 SPMSTSGQDGQQSHTKKPVEFQFCAECSNMLYPKEDEETRTLQFTCRTCHYTTNASNTCV 62
Query: 352 YVNKIMHEVDELTHINPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYV 531
+ N++ I + DPTLPR K C C E VFFQ Q R AE M+ YV
Sbjct: 63 FRNELNSSASLHAGIIEGMGKDPTLPRAK-KTCQYCGFDEMVFFQAQQRTAETGMKQIYV 121
Query: 532 CTSCKHRWTE 561
C C T+
Sbjct: 122 CVECSKPQTD 131
>UniRef50_Q7RSD7 Cluster: DNA-directed RNA polymerase ii 15.1 kDa
polypeptide; n=3; Plasmodium (Vinckeia)|Rep:
DNA-directed RNA polymerase ii 15.1 kDa polypeptide -
Plasmodium yoelii yoelii
Length = 226
Score = 93.5 bits (222), Expect = 4e-18
Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 5/118 (4%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDY---KQLADSNCVYVNKIMHEVDELTHINP 402
+ FC++CNN+LY R DK NK L+Y CR+CDY KQ + N V + E +I+P
Sbjct: 4 VNFCEKCNNILYARSDKKNKKLIYVCRSCDYISNKQNENHNIVARINYNYNRKEDIYIHP 63
Query: 403 DVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTS--CKHRWTE*IE 570
+ +D L R +D +C +CN+ EAVF Q + + M L YVCT+ C++ W + I+
Sbjct: 64 ETKNDSALGRVRDWVCKQCNNSEAVFLQLXEKISYNPMALIYVCTNKDCQY-WEKEIQ 120
>UniRef50_A7AUU3 Cluster: DNA-directed RNA polymerase 2 subunit,
putative; n=1; Babesia bovis|Rep: DNA-directed RNA
polymerase 2 subunit, putative - Babesia bovis
Length = 163
Score = 92.3 bits (219), Expect = 9e-18
Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 7/120 (5%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLAD-----SNCVYVNKIMHEVDELTHI 396
++FC ECNN+LY R D + L++ CR CDY + AD NC+ ++ E I
Sbjct: 4 LKFCPECNNILYARPDLTRRQLVFICRQCDYSRWADPGSLLDNCINRTTYNYQTREDIII 63
Query: 397 NPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTS--CKHRWTE*IE 570
P + DPTL RT+ CP+C H EA FFQ R ++ M L +VC + C WT+ I+
Sbjct: 64 PPLITKDPTLGRTRQWDCPRCGHTEATFFQLPERAYDDAMVLVFVCCNPGCGF-WTKQID 122
>UniRef50_Q8I241 Cluster: DNA-directed RNA polymerase 2 subunit,
putative; n=3; Plasmodium|Rep: DNA-directed RNA
polymerase 2 subunit, putative - Plasmodium falciparum
(isolate 3D7)
Length = 249
Score = 91.9 bits (218), Expect = 1e-17
Identities = 44/109 (40%), Positives = 68/109 (62%), Gaps = 3/109 (2%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQL-ADSNCVYVNKIMHEVD--ELTHINP 402
++FC+ECNN+LY + D+ +K L+Y CR+C+Y L + N V +I + D E +I+P
Sbjct: 4 VRFCEECNNILYAKSDRKSKKLIYVCRSCEYISLKPNENNNIVARINYNYDRKEDIYIHP 63
Query: 403 DVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKH 549
+ +DP L R +D +C +C + EAVF Q + + M L YVCT+ KH
Sbjct: 64 ETKNDPALGRVRDWVCKQCGNNEAVFLQLAEKISYNPMALIYVCTN-KH 111
>UniRef50_Q4UDQ7 Cluster: DNA-directed RNA polymerase 2 subunit,
putative; n=2; Theileria|Rep: DNA-directed RNA
polymerase 2 subunit, putative - Theileria annulata
Length = 167
Score = 91.5 bits (217), Expect = 1e-17
Identities = 45/106 (42%), Positives = 60/106 (56%), Gaps = 5/106 (4%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADS-----NCVYVNKIMHEVDELTHI 396
I FC ECNN+LY + D + L Y CR CD+ +++DS NC+Y E +
Sbjct: 4 INFCPECNNILYAKADILKRQLRYFCRQCDFSRISDSKSSEDNCIYRTDYNIAGKENIFV 63
Query: 397 NPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVC 534
+P VV DPTL RT C KC H++AVFFQ R ++ M L +VC
Sbjct: 64 SPMVVKDPTLGRTTRWRCLKCGHQKAVFFQLPERVTDDAMMLVFVC 109
>UniRef50_Q8SQU1 Cluster: DNA-directed RNA polymerase II subunit
RPB9; n=1; Encephalitozoon cuniculi|Rep: DNA-directed
RNA polymerase II subunit RPB9 - Encephalitozoon
cuniculi
Length = 108
Score = 89.4 bits (212), Expect = 6e-17
Identities = 40/108 (37%), Positives = 62/108 (57%)
Frame = +1
Query: 235 QFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVS 414
+FC+ECNN+LYP+ED N L AC+NC++ Q A S+ +YV + + D+V
Sbjct: 4 RFCKECNNLLYPKEDDNT--LFLACKNCEHIQEAKSHRLYVKNFRPKHASIELYARDLVQ 61
Query: 415 DPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWT 558
DPTLP K + C C + ++FQ + + + ++Y+C C H WT
Sbjct: 62 DPTLPSVKIN-CGNCGFNKGLYFQPRGGEEDVALSIFYLCCRCYHLWT 108
>UniRef50_Q5CPB7 Cluster: DNA-directed RNA polymerase 2 subunit;
n=2; Cryptosporidium|Rep: DNA-directed RNA polymerase 2
subunit - Cryptosporidium hominis
Length = 167
Score = 87.8 bits (208), Expect = 2e-16
Identities = 47/109 (43%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLAD-----SNCVYVNKIMHEVDELTHI 396
I+FC ECNN+L P+E+ + LLYACRNC+Y AD N V +E E +
Sbjct: 5 IRFCPECNNILCPKENIERRKLLYACRNCEYFSYADPTNAEENVVNCITYQYEGKEDILV 64
Query: 397 NPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSC 543
+ DPTL RT + C C H AVFFQ R E M L +VC SC
Sbjct: 65 ARGLHQDPTLGRTLEWNCRGCGHNVAVFFQLPERVCSEAMTLVFVCVSC 113
>UniRef50_A6RCK2 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 104
Score = 82.6 bits (195), Expect = 7e-15
Identities = 43/115 (37%), Positives = 61/115 (53%)
Frame = +1
Query: 214 GPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTH 393
G + +FC+EC+N+LYP+ED+N L++ CR C H
Sbjct: 16 GSSQIHFRFCRECSNLLYPKEDRNTNTLMFTCRTC------------------------H 51
Query: 394 INPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWT 558
+ + S P LPR+ + +CP C EAVFFQ Q R AE M+LYYVC +C + +T
Sbjct: 52 VG-EPASSPCLPRS-NKLCPSCGENEAVFFQSQQRSAETGMKLYYVCCTCGNVFT 104
>UniRef50_Q0C9E4 Cluster: Putative uncharacterized protein; n=2;
Eurotiomycetidae|Rep: Putative uncharacterized protein -
Aspergillus terreus (strain NIH 2624)
Length = 111
Score = 75.8 bits (178), Expect = 8e-13
Identities = 35/89 (39%), Positives = 51/89 (57%)
Frame = +1
Query: 226 VGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPD 405
V +FC+EC+N+LYP+ED+ N L++ CR C + A S CVY NK+ +V + + D
Sbjct: 19 VHFRFCRECSNLLYPKEDRANNRLMFTCRTCHVGEPASSYCVYQNKLNTQVGDTAGVTQD 78
Query: 406 VVSDPTLPRTKDHMCPKCNHREAVFFQGQ 492
V SDPT+ + C C A F G+
Sbjct: 79 VGSDPTV--SLPGFCTLCGDEIACFSCGE 105
>UniRef50_Q4Q8Q8 Cluster: DNA-direcetd RNA polymerase II, subunit 9,
putative; n=6; Trypanosomatidae|Rep: DNA-direcetd RNA
polymerase II, subunit 9, putative - Leishmania major
Length = 140
Score = 74.9 bits (176), Expect = 1e-12
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Frame = +1
Query: 166 INSKEMSAISLSRKDGGPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDY-KQLADS 342
+ ++E++ +S+ P + FC CNN+LYP D +N + + C C +Q D
Sbjct: 1 MEAEEITQVSIGNATTAP----MLFCSRCNNLLYPECDDDNYSMTWRCNYCKTTEQHDDC 56
Query: 343 NCVYVNKIMHEVDELTHIN--PDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEM 516
V+V + + D + ++ + +DPT R D CPKC+ + F + +E+M
Sbjct: 57 KLVHVMNLKMKADAIGGMDLVAEFANDPTAQRDPDKPCPKCSKKGVACFVNPLGQPQEDM 116
Query: 517 RLYYVC--TSCKHRW 555
LY+ C T C+H W
Sbjct: 117 TLYFACSDTVCRHVW 131
>UniRef50_Q8MPH6 Cluster: DNA directed polymerase II subunit 9; n=1;
Sterkiella histriomuscorum|Rep: DNA directed polymerase
II subunit 9 - Oxytricha trifallax (Sterkiella
histriomuscorum)
Length = 129
Score = 72.9 bits (171), Expect = 6e-12
Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNN---KVLLYACRNCDYKQLAD-----SNCVYVNKIMHEVDEL 387
++FC+EC+NML P+E + L+Y CR C Y + A NCVY ++ D+
Sbjct: 1 MRFCKECDNMLQPKEKMESDGPSYLIYDCRTCGYSERARPNDEVDNCVYRSEQTKMSDKF 60
Query: 388 THINPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
++ + + DP L R C KC + AV F T ++E M L VCT C H W
Sbjct: 61 L-VDVECIKDPCLARRIGKPCQKCGNTLAVTF---TNPSKERMNLISVCTQCTHYW 112
>UniRef50_A7EUD0 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 119
Score = 72.5 bits (170), Expect = 7e-12
Identities = 33/80 (41%), Positives = 47/80 (58%)
Frame = +1
Query: 226 VGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPD 405
+ +FC EC+NMLYP+ED + L +ACR C Y + A S+CV+ N + + V E + D
Sbjct: 19 ITFRFCSECSNMLYPKEDPDTHRLQFACRTCQYSEEAVSSCVFRNILNNAVGETAGVTQD 78
Query: 406 VVSDPTLPRTKDHMCPKCNH 465
V SDPT+ +C C H
Sbjct: 79 VGSDPTVGLP---LCLLCGH 95
>UniRef50_Q7SBJ7 Cluster: Putative uncharacterized protein
NCU08553.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU08553.1 - Neurospora crassa
Length = 230
Score = 71.7 bits (168), Expect = 1e-11
Identities = 28/67 (41%), Positives = 42/67 (62%)
Frame = +1
Query: 226 VGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPD 405
+ +FC EC+NMLYPRE ++ LL+ CR C++ + A S C+Y N + + E + D
Sbjct: 21 ITFRFCSECSNMLYPREAEDENKLLFTCRTCNFSEPATSTCIYRNILNNAAGETAGVTQD 80
Query: 406 VVSDPTL 426
V SDPT+
Sbjct: 81 VASDPTV 87
>UniRef50_Q0U3A2 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 157
Score = 66.9 bits (156), Expect = 4e-10
Identities = 27/64 (42%), Positives = 40/64 (62%)
Frame = +1
Query: 235 QFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVS 414
+FC EC+N+L+PREDK+ LL+ACR C + + A S+CV + I V + +V
Sbjct: 20 RFCSECSNLLFPREDKSENKLLFACRTCSFTEEAPSSCVMRHDISSTVGATAGVTAEVAQ 79
Query: 415 DPTL 426
DPT+
Sbjct: 80 DPTV 83
>UniRef50_Q9YEZ3 Cluster: Archaeal transcription factor S; n=2;
Thermoprotei|Rep: Archaeal transcription factor S -
Aeropyrum pernix
Length = 118
Score = 65.7 bits (153), Expect = 9e-10
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVV 411
I+FC C +++YP+ D +L+ C++C Y + A ++ V++ V+
Sbjct: 5 IKFCPRCGSIMYPKRDGARYLLV--CKSCGYSEEASREDHQAYRMRVTVEKGPRDKIVVI 62
Query: 412 SDPTLPRTK----DHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
D T + CPKC H E F+ QTR A+E M +Y C C++ W E
Sbjct: 63 DDETPVGAQVLKGSVTCPKCGHDEVYFWMMQTRSADEPMTRFYRCKRCRYTWRE 116
>UniRef50_Q58548 Cluster: DNA-directed RNA polymerase subunit M;
n=9; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit M - Methanococcus jannaschii
Length = 108
Score = 65.3 bits (152), Expect = 1e-09
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQ--LADSNCVYVNK--IMHEVDELTHIN 399
++FC +CNN++ P++ K C C Y++ A+ + Y K + ++ +++T I
Sbjct: 2 VKFCPKCNNLMLPKDGK------LKCAVCGYEEETTAEGSKEYEYKEHLENKKEKITVIE 55
Query: 400 PDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
+ + TLP T+ CPKC H EA ++ QTR A+E +Y C C H W E
Sbjct: 56 SEGLE--TLPTTRIE-CPKCGHNEAYWWLQQTRCADEPETRFYKCKKCGHTWRE 106
>UniRef50_Q07271 Cluster: DNA-directed RNA polymerase subunit M;
n=4; Sulfolobaceae|Rep: DNA-directed RNA polymerase
subunit M - Sulfolobus acidocaldarius
Length = 111
Score = 64.1 bits (149), Expect = 3e-09
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIM-HEVDELTHINPDV 408
++FC +C +M+ PR K N +Y C C Y + + ++ H E T +
Sbjct: 1 MKFCPKCGSMMMPR--KENGKTVYKCSKCGYIDTENQKEAKITTVIKHSAKEKTLVLESD 58
Query: 409 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
+ + T+ CP C + EA F+ QTR A+E +Y CT C W E
Sbjct: 59 MPKTGVQLTRGISCPSCGNDEAYFWILQTRSADEPATRFYKCTKCGKVWRE 109
>UniRef50_O96159 Cluster: Transcription factor, putative; n=5;
Plasmodium|Rep: Transcription factor, putative -
Plasmodium falciparum (isolate 3D7)
Length = 106
Score = 62.1 bits (144), Expect = 1e-08
Identities = 28/108 (25%), Positives = 57/108 (52%)
Frame = +1
Query: 238 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 417
FC C+N++ +K + + C++C+YK N +Y + ++ ++ +++
Sbjct: 4 FCPNCHNIVLVHIEKG---VYFYCKSCNYKYKI-KNKIYNKFDCQQFNKTIPLDAVDINN 59
Query: 418 PTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
+ +T+ +CPKC + EA F+ Q R A+E ++Y+C C + W E
Sbjct: 60 KNMSKTQA-VCPKCTNDEAYFYTLQIRSADEPSTIFYICVKCNYHWKE 106
>UniRef50_O27369 Cluster: DNA-directed RNA polymerase subunit M;
n=6; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit M - Methanobacterium thermoautotrophicum
Length = 104
Score = 62.1 bits (144), Expect = 1e-08
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVD--ELTHINPD 405
++FC +C +++P E K + C+ C Y++ ++ EV+ E D
Sbjct: 1 MEFCPKCGAVMFPSEGK------FKCQ-CGYEKDITDKLKDKYRVSEEVEAKETIIFTGD 53
Query: 406 VVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
V+ TLP T+ CPKC + EA ++ QTRRA+E ++ CT CKH W E
Sbjct: 54 DVN--TLPTTRVE-CPKCGNMEAFWWLQQTRRADESETRFFRCTRCKHTWRE 102
>UniRef50_Q04307 Cluster: DNA-directed RNA polymerase III subunit
RPC10; n=11; Ascomycota|Rep: DNA-directed RNA polymerase
III subunit RPC10 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 110
Score = 62.1 bits (144), Expect = 1e-08
Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIM--HEVDELTHINPD 405
+ FC CNNML + V ACR+C Y+ + +Y K + EVD++ D
Sbjct: 2 LSFCPSCNNMLLITSGDSG-VYTLACRSCPYEFPIEGIEIYDRKKLPRKEVDDVLGGGWD 60
Query: 406 VVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
V D T + ++ C A FFQ Q R A+E M +Y C +C HRW E
Sbjct: 61 NV-DQTKTQCPNY--DTCGGESAYFFQLQIRSADEPMTTFYKCVNCGHRWKE 109
>UniRef50_A7ASV0 Cluster: Transcription factor S-II protein,
putative; n=3; Piroplasmida|Rep: Transcription factor
S-II protein, putative - Babesia bovis
Length = 109
Score = 61.7 bits (143), Expect = 1e-08
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Frame = +1
Query: 286 NKVLLYACRNCDYKQLADSNCVY---VNKIMHEVDELTHINPDVVSDPTLPRTKDH---- 444
+ VL ++C + CVY +++ H+ T ++ P +H
Sbjct: 9 HSVLFFSCNPPQTSTFSCMRCVYELPISRRYHKSTVYTQFEKEIPRSPHSVNEFEHAPKI 68
Query: 445 --MCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
+CP C+++EA F QTR A+E M ++VCT+C+HRW E
Sbjct: 69 IAVCPSCHNKEAYFMSIQTRSADEPMTQFFVCTACRHRWKE 109
>UniRef50_Q8ZTX9 Cluster: DNA-directed RNA polymerase subunit M;
n=7; Thermoprotei|Rep: DNA-directed RNA polymerase
subunit M - Pyrobaculum aerophilum
Length = 110
Score = 61.7 bits (143), Expect = 1e-08
Identities = 33/110 (30%), Positives = 49/110 (44%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVV 411
++FC ++L P N VL C C Y++ + + V+ +
Sbjct: 1 MRFCPNDKSLLIPVRKGNVTVL--RCPKCGYEEEVSQDVKNRYQSKTAVESRNSVIVVAD 58
Query: 412 SDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
+ P LP+ K CPKC H EA + QTR A+E +Y CT C + W E
Sbjct: 59 TTPNLPKVKTRGCPKCGHDEAYVWVQQTRAADEPPTRFYRCTKCGYTWRE 108
>UniRef50_UPI0000498537 Cluster: DNA-directed RNA polymerase II
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase II subunit - Entamoeba
histolytica HM-1:IMSS
Length = 137
Score = 60.5 bits (140), Expect = 3e-08
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Frame = +1
Query: 238 FCQECNNMLYPREDKNNKVLLYACR--NCDYKQLAD---SNCVYVNKIMHEVDELTHINP 402
FC +C+ ++ PR ++ L + CR NC + + A+ S CVY+ + T +
Sbjct: 11 FCPDCHQIMLPRSCGDD--LYFVCRRPNCGHFEKAEDPTSFCVYIKNFSET--KATTVAA 66
Query: 403 DVVSDPTLPRTKDHMCPKCNHR-EAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
DV DPT P+T +CP C + +AV++ +++ Y CT+C + W E
Sbjct: 67 DVSKDPTYPKTTK-LCPHCGQQHDAVYYYSAHWNYNCSLQINYQCTNCMYSWAE 119
>UniRef50_Q5KEF1 Cluster: RNA polymerase III smallest subunit,
putative; n=2; Filobasidiella neoformans|Rep: RNA
polymerase III smallest subunit, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 132
Score = 58.8 bits (136), Expect = 1e-07
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Frame = +1
Query: 238 FCQECNNMLY--PREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVV 411
FC C N L RED +KV C C Y+ + + + + E+ +
Sbjct: 3 FCPYCANSLTIGDREDSTDKV----CPTCPYQFIIERQISMRTHLKRK--EVDDVLGGKE 56
Query: 412 SDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
+ + +T D CPKC+HR A F Q Q R A+E M +Y C C H+W E
Sbjct: 57 AWANVDKT-DTACPKCDHRRAYFRQMQIRSADEPMTTFYKCCECGHQWRE 105
>UniRef50_A7D318 Cluster: Transcription factor TFIIS; n=1;
Halorubrum lacusprofundi ATCC 49239|Rep: Transcription
factor TFIIS - Halorubrum lacusprofundi ATCC 49239
Length = 108
Score = 58.8 bits (136), Expect = 1e-07
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYA-CRNCDYKQLADSNCVYVNKIMHEVDELTHINPDV 408
++FC EC +M+ E +++ V C N + D +++ EV +++
Sbjct: 1 MKFCDECGSMMKSGEGEDHWVCSSEDCGNELGRDNGDDEWTTESQVESEVIDVSD----- 55
Query: 409 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
D LP+T H CP+C + A ++ Q R A+E ++VCT C+H+W E
Sbjct: 56 AEDKGLPKTTAH-CPECGNDRAYWYMQQIRSADESETRFFVCTECEHKWRE 105
>UniRef50_Q15ES4 Cluster: RNA polymerase III subunit C11-like
protein; n=2; Schistosoma|Rep: RNA polymerase III
subunit C11-like protein - Schistosoma mansoni (Blood
fluke)
Length = 115
Score = 57.6 bits (133), Expect = 2e-07
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINP--D 405
+ FC C+++L E + L + C Y+ V +K +V +
Sbjct: 3 VLFCPLCHSLLMIEESAHCYSLNCSAPICSYRWFVTQPLVLEHKPRQDVRLRLEEDAVFS 62
Query: 406 VVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
V + + D CPKC+H A F Q QTR A+E + Y C C H WTE
Sbjct: 63 VEDEYSSSAQTDEKCPKCSHTRAYFVQMQTRSADEPSTIKYSCIKCHHIWTE 114
>UniRef50_A6SDC8 Cluster: Putative uncharacterized protein; n=2;
Pezizomycotina|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 83
Score = 57.6 bits (133), Expect = 2e-07
Identities = 28/69 (40%), Positives = 39/69 (56%)
Frame = +1
Query: 259 MLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSDPTLPRTK 438
MLYP+ED + L +ACR C Y + A S+CV+ N + + V E + DV SDPT+
Sbjct: 1 MLYPKEDPDTHRLQFACRTCQYSEEAVSSCVFRNVLNNAVGETAGVTQDVGSDPTVGLP- 59
Query: 439 DHMCPKCNH 465
+C C H
Sbjct: 60 --LCLLCGH 66
>UniRef50_Q74N12 Cluster: NEQ377; n=1; Nanoarchaeum equitans|Rep:
NEQ377 - Nanoarchaeum equitans
Length = 106
Score = 57.2 bits (132), Expect = 3e-07
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVV 411
++FC + ++L P+++ + L+ C C YK+ S I EV + + +
Sbjct: 1 MEFCPKDGSILIPKKEGDKTYLV--CPVCGYKKEVTSLV-----IKEEVKKKEELGKGIA 53
Query: 412 SDPTL-PRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
T+ + K CPKC+ E V+F QTR ++E ++Y C C + W E
Sbjct: 54 EKETIYSKAKGVKCPKCSSEEVVYFTLQTRASDEAETIFYKCLKCGYTWRE 104
>UniRef50_Q9P9I8 Cluster: Archaeal transcription factor S; n=2;
Methanococcaceae|Rep: Archaeal transcription factor S -
Methanococcus thermolithotrophicus
Length = 105
Score = 56.4 bits (130), Expect = 5e-07
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQ-LADSNCVYV--NKIMHEVDELTHINP 402
++FC +CNN++ P KN ++ C C +++ L + Y KI + E+T I
Sbjct: 2 VEFCPKCNNIMLP---KNGRL---KCTVCGFEEELGNRTEEYELKEKIEAKKQEVTVIE- 54
Query: 403 DVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
DV TLP T+ CP C + EA ++ QTR A+E +Y C C H W E
Sbjct: 55 DV---DTLPTTRIE-CPSCGNMEASWWLQQTRCADEPETRFYKCKKCGHTWRE 103
>UniRef50_Q97AQ6 Cluster: Transcription factor [TFIIS/RPB9]; n=5;
Thermoplasmatales|Rep: Transcription factor [TFIIS/RPB9]
- Thermoplasma volcanium
Length = 106
Score = 56.0 bits (129), Expect = 7e-07
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Frame = +1
Query: 238 FCQECNNMLYPREDKNNKVLLYACRNCDYK-QLADSNCVYVNKIMHEVDELTHINPDVVS 414
FC +C +++ P + Y C +C Y+ + VNK + E I +V +
Sbjct: 8 FCPKCGSLMTPVNGR------YVCPSCGYEVSKKKEDLKIVNKSNDK--ETIMIREEVSA 59
Query: 415 DPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
+P D +CP+C+H+ A + QTR A+E +Y C C +RW E
Sbjct: 60 EPL---DSDAICPRCHHKGARYVLKQTRSADEPETKFYTCEECGYRWRE 105
>UniRef50_O13896 Cluster: DNA-directed RNA polymerase III subunit
RPC10; n=1; Schizosaccharomyces pombe|Rep: DNA-directed
RNA polymerase III subunit RPC10 - Schizosaccharomyces
pombe (Fission yeast)
Length = 109
Score = 55.6 bits (128), Expect = 9e-07
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNK--IMHEVDELTHINPD 405
+QFC C N L D+ + + CR C Y S +Y EVD++
Sbjct: 1 MQFCPTCGNHLIVAVDEEGRNA-FDCRTCPY-HFPISTFLYSRHEFAQKEVDDVLGGEEA 58
Query: 406 VVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
S+ T ++ KC++ A FFQ Q R A+E M +Y CT CK +W E
Sbjct: 59 FESNQQTEVTCENT--KCDNNRAYFFQLQIRSADEPMSTFYRCTKCKFQWRE 108
>UniRef50_Q5V5C5 Cluster: DNA-directed RNA-polymerase subunit M;
n=4; Halobacteriaceae|Rep: DNA-directed RNA-polymerase
subunit M - Haloarcula marismortui (Halobacterium
marismortui)
Length = 108
Score = 54.8 bits (126), Expect = 2e-06
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHI-NPDV 408
++FC EC +M+ +++ + C +C Y++ ++ + + E + + +
Sbjct: 1 MEFCDECGSMMKTDDER------WVCGSCGYEKARNAEAEQEMAVTTQGQEESEVVDTSE 54
Query: 409 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
V + T CP+C + A + Q R A+E ++ CT C+H+W E
Sbjct: 55 VDAEDMGPTTGARCPECGNERAFYEMKQIRAADESETRFFTCTECEHKWRE 105
>UniRef50_Q0W2J5 Cluster: Archaeal transcription factor S; n=4;
Euryarchaeota|Rep: Archaeal transcription factor S -
Uncultured methanogenic archaeon RC-I
Length = 106
Score = 54.8 bits (126), Expect = 2e-06
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADS-NCVYVNKIMHEVDELTHINPDV 408
++FC +C +++ P K CR C +++ A + N + + + E+T + D
Sbjct: 1 MEFCPKCKSIMRPGGGGMVK-----CRKCGHEKKAQAGNMIVGGPVKDQEREITVL--DE 53
Query: 409 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
D LP T++ CP C +++A ++ Q R A+E ++ CT C W E
Sbjct: 54 KQDAGLPTTEEVKCPDCGNQKAYWWMRQLRSADESEVRFFRCTECGKTWRE 104
>UniRef50_Q8PX24 Cluster: DNA-directed RNA polymerase subunit M;
n=3; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit M - Methanosarcina mazei (Methanosarcina frisia)
Length = 107
Score = 54.4 bits (125), Expect = 2e-06
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCV-YVNKIMHEVDELTHINPDV 408
+QFC +C +M++P++ Y CR C +S+ +V+K + E+ + +
Sbjct: 4 MQFCTKCKSMMFPKDGN------YHCRKCGSTIPIESDAKNFVSKAKIDDHEVVVLEGEQ 57
Query: 409 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
S LP T + CP+C + A ++ Q R A+E ++ CT C + W E
Sbjct: 58 TSG--LPTT-NAKCPECGNNTAAWWLRQLRSADESETRFFKCTKCGYTWRE 105
>UniRef50_A3LW94 Cluster: DNA-directed RNA polymerase subunit; n=10;
Fungi/Metazoa group|Rep: DNA-directed RNA polymerase
subunit - Pichia stipitis (Yeast)
Length = 111
Score = 53.2 bits (122), Expect = 5e-06
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMH--EVDELTHINPD 405
+ FC C+NML + Y C C Y+ + ++ K ++ EVD++ + D
Sbjct: 2 LSFCPNCSNMLLISAGDDGCNRFY-CPTCPYEFKINGLSMFERKKLYRKEVDDV--LGGD 58
Query: 406 VVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
D + C +A FFQ Q R A+E M +Y C +C H+W E
Sbjct: 59 GAWDNVDQTSAQCPVDSCGGNKAYFFQLQIRSADEPMTTFYKCVNCGHKWKE 110
>UniRef50_Q9Y2Y1 Cluster: DNA-directed RNA polymerase III subunit
RPC10; n=21; Fungi/Metazoa group|Rep: DNA-directed RNA
polymerase III subunit RPC10 - Homo sapiens (Human)
Length = 108
Score = 53.2 bits (122), Expect = 5e-06
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +1
Query: 238 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 417
FC C N L E + + ++C C Y + + N+ ++ E+ + +
Sbjct: 4 FCPGCGNGLIVEEGQ--RCHRFSCNTCPY--VHNITRKVTNRKYPKLKEVDDVLGGAAAW 59
Query: 418 PTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVC--TSCKHRWTE 561
+ T + CPKC H A F Q QTR A+E M +Y C C HRW +
Sbjct: 60 ENVDSTAES-CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108
>UniRef50_Q9LU97 Cluster: Similarity to transcription-associated
zinc ribbon protein; n=2; Arabidopsis thaliana|Rep:
Similarity to transcription-associated zinc ribbon
protein - Arabidopsis thaliana (Mouse-ear cress)
Length = 119
Score = 52.4 bits (120), Expect = 8e-06
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Frame = +1
Query: 238 FCQECNNMLYPREDKNNKVLLYA-CRNC----DYKQLADSNCVYV---NKIMHEVDELTH 393
FC C ML + K YA C +C + K + D Y I E+ ++
Sbjct: 11 FCNLCGTMLVLKSTK------YAECPHCKTTRNAKDIIDKEIAYTVSAEDIRRELG-ISL 63
Query: 394 INPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
++ LP+ K C KC H E V+ QTR A+E YY C +C HR+TE
Sbjct: 64 FGEKTQAEAELPKIKK-ACEKCQHPELVYTTRQTRSADEGQTTYYTCPNCAHRFTE 118
>UniRef50_A0E7M3 Cluster: Chromosome undetermined scaffold_81, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_81,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 118
Score = 52.4 bits (120), Expect = 8e-06
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Frame = +1
Query: 238 FCQECNNMLYPREDKNNKVLLYACRNCDYK-QLADSNCVYV-NKIMHEVDELTHINPDV- 408
FC +C+ ML E + + C C YK + D Y+ + I E P
Sbjct: 9 FCPQCHFMLELPEVMD----IIECNRCGYKCSITDYQPKYIISTIKMEPKSWLSNQPQES 64
Query: 409 -VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
+SD + + +CPKC+H EA F Q R A+E ++Y C C+ R+
Sbjct: 65 KLSDQSHRAVIEQVCPKCSHEEAYFSTAQLRSADEGSTVFYECVKCQFRY 114
>UniRef50_A0DZF5 Cluster: Chromosome undetermined scaffold_70, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_70,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 149
Score = 52.4 bits (120), Expect = 8e-06
Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 21/134 (15%)
Frame = +1
Query: 223 YVGIQFCQECNNMLYPRED-KNNKVLLYACRNCD----------YKQLADSNCVYVNKIM 369
Y G +FC C N+L P D N ++L + CRN D + + + + + K
Sbjct: 6 YNGWRFCPRCKNLLKPYHDGDNTEILQFKCRNQDCGDNGIIEVKIDKTLNKDALLLKKDY 65
Query: 370 HEVDELTHINPDVVSDPTLPRTK----DHMCP--KCNHREAVFFQGQTRRAEEEMRLYYV 531
+ + ++ DP++PR + +C +CN+ EA++F +T + E+E+ + Y+
Sbjct: 66 QAAKAIDITDNTLILDPSMPRKRVICNKQICQLFRCNYDEAIYFL-KTDKNEKEIIIQYI 124
Query: 532 CTS----CKHRWTE 561
C + C ++WT+
Sbjct: 125 CANKNPICGNKWTQ 138
>UniRef50_A2E2P5 Cluster: DNA-directed RNA polymerase II 15.1 kDa
polypeptide-related protein; n=1; Trichomonas vaginalis
G3|Rep: DNA-directed RNA polymerase II 15.1 kDa
polypeptide-related protein - Trichomonas vaginalis G3
Length = 150
Score = 52.0 bits (119), Expect = 1e-05
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Frame = +1
Query: 232 IQFCQECNNMLYPR--EDKNNKV--LLYACRNCDYKQLADSNCVYVNKIMHEVDELTHIN 399
+ FC EC ++L PR + +N + L + C C+ + D N VYVN + + ++
Sbjct: 25 VYFCSECQSVLTPRVFKKENGEAGKLEFYCAQCNRSEYFDDNLVYVNILKRDASSVS-AT 83
Query: 400 PDVVSDPTLPRTKDHMCPKC-NHREAVFFQGQTRRAEEEMRLYYVCTSC 543
+ SDPTL R C C + E V F T EE M C C
Sbjct: 84 KVLTSDPTLHRW-TVFCNNCRKYEEHVIFNAPTLAGEETMTQLKQCCVC 131
>UniRef50_Q9N4B7 Cluster: DNA-directed RNA polymerase subunit; n=9;
Bilateria|Rep: DNA-directed RNA polymerase subunit -
Caenorhabditis elegans
Length = 108
Score = 51.6 bits (118), Expect = 1e-05
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVV 411
+ FC EC +L + + + + ++C C Y + ++I ++ ++ DV+
Sbjct: 2 LTFCPECGCVL--QIESGEQCMRFSCPACPY--VCPVTQTVTSRIYPKLKDID----DVL 53
Query: 412 SDPTL---PRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVC--TSCKHRWTE 561
P + D CP C+H A F Q QTR A+E ++Y C +C HRW +
Sbjct: 54 GGPGAWANAQVTDETCPVCSHGRAYFMQLQTRSADEPSTIFYRCADNACAHRWKD 108
>UniRef50_Q0IR54 Cluster: Os11g0676800 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os11g0676800 protein -
Oryza sativa subsp. japonica (Rice)
Length = 822
Score = 50.8 bits (116), Expect = 3e-05
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = +1
Query: 382 ELTHINPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAE 507
+ T + DV DPTLPRTK C C H EAVFFQG + ++
Sbjct: 190 DFTQVLQDVAGDPTLPRTKSVRCAACGHGEAVFFQGYKKSSQ 231
>UniRef50_Q5CYY8 Cluster: RNA polymerase III subunit C11; n=1;
Cryptosporidium parvum Iowa II|Rep: RNA polymerase III
subunit C11 - Cryptosporidium parvum Iowa II
Length = 62
Score = 50.0 bits (114), Expect = 5e-05
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +1
Query: 445 MCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
+CPKC+ EA FFQ Q R A+E M +Y C C +W E
Sbjct: 23 VCPKCSFSEAYFFQLQIRSADEPMTSFYTCVKCDFKWKE 61
>UniRef50_A3DM83 Cluster: Transcription factor S; n=1;
Staphylothermus marinus F1|Rep: Transcription factor S -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 104
Score = 50.0 bits (114), Expect = 5e-05
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +1
Query: 307 CRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSDPT----LPRTKDHMCPKCNHREA 474
C C Y+ A + + +I +++ VV + LP T++ CPKC + EA
Sbjct: 14 CTRCGYRVKATEKDLKLYRISVKIEHSNKEKTVVVDEEERLRGLPITREVTCPKCGYHEA 73
Query: 475 VFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
++ QTR A+E +Y C C + W E
Sbjct: 74 YYWIVQTRAADEPPTRFYKCRRCGYVWRE 102
>UniRef50_UPI00004998C5 Cluster: RNA polymerase III subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerase III
subunit - Entamoeba histolytica HM-1:IMSS
Length = 107
Score = 49.6 bits (113), Expect = 6e-05
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Frame = +1
Query: 238 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMH-EVDELTHINPDVVS 414
FC C N+L L + C C YK + VY +++ ++D + +
Sbjct: 4 FCANCGNLLVVERGTE---LYFKCNTCPYKFTFNKKIVYESELKRKQIDAVLGEEQWKNA 60
Query: 415 DPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTS--CKHRWTE 561
T + +C KC H A F Q Q R A+E M +Y C + C ++W +
Sbjct: 61 QKT-----EIICEKCGHNSAYFMQIQIRSADEPMTTFYKCANFDCGYQWRD 106
>UniRef50_O17587 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 119
Score = 48.8 bits (111), Expect = 1e-04
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Frame = +1
Query: 304 ACRNCDYKQLADSNCVYVNKIMHEVDELTHINPD-VVSDPTLPRTKDHMCPKCNHREAVF 480
+C+ C + V + ++ E T + D + +D + DH+C KC H +A +
Sbjct: 31 SCKVCSTRWAVKERVDQVVSRVEKIYERTVADTDGIENDESADAVVDHICTKCGHSKASY 90
Query: 481 FQGQTRRAEEEMRLYYVCTSCKHR 552
QTR A+E ++Y C CK +
Sbjct: 91 STMQTRSADEGQTVFYTCLKCKKK 114
>UniRef50_Q5V537 Cluster: DNA-directed RNA-polymerase subunit M;
n=6; Halobacteriaceae|Rep: DNA-directed RNA-polymerase
subunit M - Haloarcula marismortui (Halobacterium
marismortui)
Length = 107
Score = 48.4 bits (110), Expect = 1e-04
Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSN--CVYVNKIMHEVDELTHINPD 405
+QFC +C +M++ D+ C++C + D + +V+ DEL
Sbjct: 1 MQFCDDCGSMMHADGDE------MVCQSCGARVAKDEDRAAAFVSTDEQSDDELIETEEG 54
Query: 406 VVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
+ P D C +C H +A + QT A+E ++ C C HRW E
Sbjct: 55 SNFEGK-PTADDVTCEECGHGKAWYTIKQTGSADEPPTRFFKCQECGHRWRE 105
>UniRef50_A0RXH6 Cluster: DNA-directed RNA polymerase, subunit
M/Transcription elongation factor TFIIS; n=1;
Cenarchaeum symbiosum|Rep: DNA-directed RNA polymerase,
subunit M/Transcription elongation factor TFIIS -
Cenarchaeum symbiosum
Length = 103
Score = 48.4 bits (110), Expect = 1e-04
Identities = 32/108 (29%), Positives = 45/108 (41%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVV 411
++FC +C + L D + C C Y + A K E+ ++ V
Sbjct: 1 MRFCPKCEDRLRKNGDAS------VCPKCGYTESAARGPTKA-KPAEGTPEINVLDGPV- 52
Query: 412 SDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
D L T C KC H EAV++ QTR A+E +Y C C H W
Sbjct: 53 -DEKLLSTIKIECEKCGHGEAVWWMLQTRSADEPTTQFYRCIKCSHTW 99
>UniRef50_Q9LNT2 Cluster: T20H2.16 protein; n=1; Arabidopsis
thaliana|Rep: T20H2.16 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 122
Score = 48.0 bits (109), Expect = 2e-04
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
C KC H E V+ QTR A+E YY C +C HR+TE
Sbjct: 84 CEKCQHPELVYTTRQTRSADEGQTTYYTCPNCGHRFTE 121
>UniRef50_Q245U9 Cluster: F-box domain containing protein; n=1;
Tetrahymena thermophila SB210|Rep: F-box domain
containing protein - Tetrahymena thermophila SB210
Length = 1341
Score = 48.0 bits (109), Expect = 2e-04
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 14/146 (9%)
Frame = +1
Query: 163 KINSKEMSAISLSRKDGGPGYV----GIQFCQECNNMLYPRE--DKNNKVLLYACRNC-- 318
++ + S I+++++ G V G +FC++C + P+ + V++++C +C
Sbjct: 1057 RMQAMRKSQINITKQMSGESEVENCNGFRFCKDCGKLCIPQRASTQEQNVMIFSCSSCGE 1116
Query: 319 -----DYKQLADSNCVYVNKIMHEVDELTHI-NPDVVSDPTLPRTKDHMCPKCNHREAVF 480
+ K + D + +I+ E I N + DP++PR K C C V
Sbjct: 1117 RRCVINLKGVRDDQVIKKTQILQS--EAADIKNRALGQDPSMPR-KQMYCRNCKIDSEVV 1173
Query: 481 FQGQTRRAEEEMRLYYVCTSCKHRWT 558
+ + + E+ + + Y+C C WT
Sbjct: 1174 YYYKAGKEEKNIVIQYICKECGFCWT 1199
>UniRef50_UPI00006CB60F Cluster: hypothetical protein
TTHERM_00444250; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00444250 - Tetrahymena
thermophila SB210
Length = 108
Score = 47.6 bits (108), Expect = 2e-04
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDV- 408
+ FC C N L + N ++CR C Y V D+ H D+
Sbjct: 1 MNFCPLCANALIIQNVGGNN--RFSCRTCTYFYPLLKKIETVTYSRMVKDDTIH---DIS 55
Query: 409 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
+ +L KD +CP C R A Q R +E +Y+C +C H W +
Sbjct: 56 LQKESLQTDKDMICPACEKRGAYIRLEQDRSLDEGQTQHYICKNCSHTWKD 106
>UniRef50_A2ZGV6 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (indica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. indica
(Rice)
Length = 122
Score = 47.6 bits (108), Expect = 2e-04
Identities = 20/35 (57%), Positives = 22/35 (62%)
Frame = +1
Query: 382 ELTHINPDVVSDPTLPRTKDHMCPKCNHREAVFFQ 486
+ T + DV DPTLPRTK C C H EAVFFQ
Sbjct: 23 DFTQVLQDVAGDPTLPRTKSVRCAACGHGEAVFFQ 57
Score = 47.6 bits (108), Expect = 2e-04
Identities = 20/35 (57%), Positives = 22/35 (62%)
Frame = +1
Query: 382 ELTHINPDVVSDPTLPRTKDHMCPKCNHREAVFFQ 486
+ T + DV DPTLPRTK C C H EAVFFQ
Sbjct: 78 DFTQVLQDVAGDPTLPRTKSVRCAACGHGEAVFFQ 112
>UniRef50_A7TNI5 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 323
Score = 47.6 bits (108), Expect = 2e-04
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = +1
Query: 283 NNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSDPTLPR--TKDHMCPK 456
N + NCD K+LA + + +++E+T N T+ R T C K
Sbjct: 234 NGDITAVFLANCDTKELAPEH------LKQKMEEITRQNLFNAQGATIERSVTDRFTCGK 287
Query: 457 CNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C ++ ++Q QTR A+E + + C +C +RW
Sbjct: 288 CKEKKVSYYQLQTRSADEPLTTFCTCEACGNRW 320
>UniRef50_Q2NEY4 Cluster: RpoM2; n=2; Methanobacteriaceae|Rep: RpoM2
- Methanosphaera stadtmanae (strain DSM 3091)
Length = 105
Score = 47.6 bits (108), Expect = 2e-04
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDY-KQLADSNCV-YVNKIMHEVDELTHINPD 405
++FC C +L P+ K +L+ C C+Y K+L+D YV I +V + +I
Sbjct: 1 MEFCPNCGKVLLPK-----KGILH-CYGCNYEKKLSDDEKQDYV--INKDVSDKQNIIVT 52
Query: 406 VVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
S T P T+ +C +C +RE ++ Q R++E +Y CT C + W
Sbjct: 53 DDSINTHPTTRG-LCYRCGNRELEWWMVQMHRSDEAETRFYRCTKCGNTW 101
>UniRef50_A1RXU9 Cluster: Transcription termination factor Tfs; n=1;
Thermofilum pendens Hrk 5|Rep: Transcription termination
factor Tfs - Thermofilum pendens (strain Hrk 5)
Length = 109
Score = 47.2 bits (107), Expect = 3e-04
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVV 411
++FC +C ++ P KVL C C Y + + + ++ H ++ +V
Sbjct: 1 MEFCPKCGGLMVPSVVNGKKVL--RCSRCGY--IVEKSNPGTYRVSHRIERTPKDVVTLV 56
Query: 412 S-DPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
D ++ C C + +A ++ QTR +E +Y+CT C+ + E
Sbjct: 57 DVDVSVLPVVSFKCENCGNDKAYVYELQTRAGDEPATRFYICTKCRKVYRE 107
>UniRef50_Q9LNK0 Cluster: DNA-directed RNA polymerase subunit; n=3;
Arabidopsis thaliana|Rep: DNA-directed RNA polymerase
subunit - Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 46.8 bits (106), Expect = 4e-04
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNK--IMHEVDELTHINPD 405
++FC C N+L N++ + C C Y K ++ + E D
Sbjct: 1 MEFCPTCGNLLRYEGGGNSR---FFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDD 57
Query: 406 VVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
+ PT T + CP+C H +A F Q R A+E +Y C C+ W E
Sbjct: 58 I---PTAAET-EAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCEFTWRE 105
>UniRef50_Q6EU09 Cluster: DNA-directed RNA polymerase subunit; n=3;
Oryza sativa|Rep: DNA-directed RNA polymerase subunit -
Oryza sativa subsp. japonica (Rice)
Length = 110
Score = 46.8 bits (106), Expect = 4e-04
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVV 411
++FC C +L + L + C C Y + V +++ + E + D +
Sbjct: 1 MEFCPGCGMLLQIQPATGGNRLRFYCPTCPYVCPVKNKIVKKARLVKKEVEPIFSDSDAM 60
Query: 412 SDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVC--TSCKHRWTE 561
+ P+T CP+C + EA + Q Q R A+E M +Y C C+ W E
Sbjct: 61 KNA--PKTTT-TCPRCQNGEAYYRQMQIRSADEPMSTFYKCCREECQFDWRE 109
>UniRef50_A4RUS3 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 120
Score = 46.8 bits (106), Expect = 4e-04
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
CP C H EA F Q Q R A+E M ++Y C C +W E
Sbjct: 82 CPGCAHDEAYFMQIQIRSADEPMSVFYKCVKCARQWRE 119
>UniRef50_A2RAZ1 Cluster: Complex: hRPC11 is a small; n=5;
Eurotiomycetidae|Rep: Complex: hRPC11 is a small -
Aspergillus niger
Length = 117
Score = 46.4 bits (105), Expect = 6e-04
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Frame = +1
Query: 232 IQFCQECNNML-YPREDKNNK----VLLYACRNCDYKQLADSNCVYVNKIMH-EVDELTH 393
+ FC C+N L R + + V + CR C Y+ D + + EV+++
Sbjct: 3 LTFCPNCSNALTISRAEPTTRHPLGVNRFECRTCPYQYALDQSWFEKTPMKQKEVEDVFG 62
Query: 394 INPDVVSDPTLPRTKDHMCPK--CNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
+ + ++ CP CN A FFQ Q R A+E M + CT+C RW E
Sbjct: 63 GKEEFANADSMAT----QCPAEDCNGDRAYFFQLQIRSADEPMTTFLKCTTCGARWRE 116
>UniRef50_Q5CUJ8 Cluster: Putative uncharacterized protein; n=1;
Cryptosporidium parvum Iowa II|Rep: Putative
uncharacterized protein - Cryptosporidium parvum Iowa II
Length = 203
Score = 46.0 bits (104), Expect = 7e-04
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +1
Query: 403 DVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHR 552
D + P+ ++ +CP+C+H EA F Q Q R A+E + Y C C+HR
Sbjct: 150 DAMHKKKAPKIQE-ICPECSHNEAFFTQFQARSADEGTTVMYECCKCQHR 198
>UniRef50_Q4P1X5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 315
Score = 46.0 bits (104), Expect = 7e-04
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 433 TKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
T C +C R+ ++Q QTR A+E M + CT+C H+W
Sbjct: 272 TDAFQCGRCKQRKTRYYQMQTRSADEPMTTFVTCTNCNHKW 312
>UniRef50_Q9P1U0 Cluster: DNA-directed RNA polymerase I subunit
RPA12; n=22; Eumetazoa|Rep: DNA-directed RNA polymerase
I subunit RPA12 - Homo sapiens (Human)
Length = 126
Score = 46.0 bits (104), Expect = 7e-04
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACR-NCDYKQLADSNCVYVNKIMHEVDELTHINPDV 408
+ FC +C ++L P + V C N + + + V + + H++ ++ +
Sbjct: 17 LDFCSDCGSVL-PLPGAQDTVTCIRCGFNINVRDF-EGKVVKTSVVFHQLGTAMPMSVEE 74
Query: 409 VSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
+ P D CP+C H + Q R A+E ++Y CT+CK + E
Sbjct: 75 GPECQGP-VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTNCKFQEKE 124
>UniRef50_A2EBM6 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 109
Score = 45.6 bits (103), Expect = 0.001
Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Frame = +1
Query: 238 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHI-NPDVVS 414
FC C N+L D + CR C++ V + ++ +D I N D +S
Sbjct: 6 FCPACGNLLLV--DTSGDRTQLKCRACNFVMGFVGRTVQ-SAPLNPLDVKALITNDDAMS 62
Query: 415 DPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
+ + C KC H EA F + Q R A+E L++ C C + W E
Sbjct: 63 FQNKTQAR---CDKCGHNEAFFTEIQIRSADEPATLFFKCCKCGNTWRE 108
>UniRef50_Q5YFI0 Cluster: Transcription elongation factor TFIIS;
n=2; Singapore grouper iridovirus|Rep: Transcription
elongation factor TFIIS - Singapore grouper iridovirus
Length = 92
Score = 45.2 bits (102), Expect = 0.001
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
CPKC ++ Q QTR A+E M ++ VC++C RWT+
Sbjct: 55 CPKCGCKKVHVVQRQTRSADEPMTVFAVCSNCGKRWTQ 92
>UniRef50_A7DQB3 Cluster: Transcription termination factor Tfs; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep:
Transcription termination factor Tfs - Candidatus
Nitrosopumilus maritimus SCM1
Length = 105
Score = 45.2 bits (102), Expect = 0.001
Identities = 24/83 (28%), Positives = 36/83 (43%)
Frame = +1
Query: 307 CRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSDPTLPRTKDHMCPKCNHREAVFFQ 486
C C Y + A+ E +E + + P K C KC H EA+++
Sbjct: 20 CSKCGYTEGAEEKQTKKTVETEEQEESILAFEGNEGEESHPTIKIE-CEKCGHDEAIWWM 78
Query: 487 GQTRRAEEEMRLYYVCTSCKHRW 555
QTR A+E +Y CT C++ W
Sbjct: 79 LQTRSADEPTTQFYRCTKCQYTW 101
>UniRef50_Q01C33 Cluster: RNA polymerase III subunit C11; n=2;
Ostreococcus|Rep: RNA polymerase III subunit C11 -
Ostreococcus tauri
Length = 136
Score = 44.4 bits (100), Expect = 0.002
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 433 TKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
T D CPKC H+ F+ Q R A+E ++Y C C H +++
Sbjct: 92 TVDEKCPKCKHKGLNFYTMQLRSADEGQTVFYECPKCNHTFSQ 134
>UniRef50_Q4N8B9 Cluster: Transcription elongation factor SII,
putative; n=1; Theileria parva|Rep: Transcription
elongation factor SII, putative - Theileria parva
Length = 324
Score = 44.0 bits (99), Expect = 0.003
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KCN + ++Q QTR ++E M + C +CK+RW
Sbjct: 287 CNKCNSKVTTYYQLQTRSSDEPMTTFVTCLNCKNRW 322
>UniRef50_Q4DRW2 Cluster: Transcription elongation factor, putative;
n=3; Trypanosoma|Rep: Transcription elongation factor,
putative - Trypanosoma cruzi
Length = 243
Score = 44.0 bits (99), Expect = 0.003
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
CP C R+ + Q QTR A+E M ++ +C C H+W
Sbjct: 205 CPSCKARDCSWTQKQTRSADEPMTVFCICNVCDHKW 240
>UniRef50_Q7QY69 Cluster: GLP_572_32225_32536; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_572_32225_32536 - Giardia lamblia
ATCC 50803
Length = 103
Score = 43.6 bits (98), Expect = 0.004
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 439 DHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
D CPKC+H +A + Q R A+E +++ C SC H++
Sbjct: 61 DETCPKCHHGQAYYASMQMRSADEGQTIFFECCSCGHKY 99
>UniRef50_Q9ZVH8 Cluster: Putative elongation factor; n=5;
Magnoliophyta|Rep: Putative elongation factor -
Arabidopsis thaliana (Mouse-ear cress)
Length = 378
Score = 43.2 bits (97), Expect = 0.005
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 433 TKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
T C +C R+ ++Q QTR A+E M Y C +C + W
Sbjct: 335 TDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCDNHW 375
>UniRef50_Q7QXB3 Cluster: GLP_741_50228_49188; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_741_50228_49188 - Giardia lamblia
ATCC 50803
Length = 346
Score = 43.2 bits (97), Expect = 0.005
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 403 DVVSDPTLPRTKDH---MCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
++++ L R H C KC V + QTR A+E + Y C+SC HRW
Sbjct: 290 EIMASVDLKRFVQHTGIQCKKCKQETVVRLEKQTRSADEATTIEYTCSSCGHRW 343
>UniRef50_Q4Q3Q4 Cluster: Transcription elongation factor-like
protein; n=3; Leishmania|Rep: Transcription elongation
factor-like protein - Leishmania major
Length = 473
Score = 43.2 bits (97), Expect = 0.005
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
C +C R F++ QTR A+E Y C CK+ WT+
Sbjct: 435 CGRCGKRHCTFYEQQTRSADEPTTKYITCLDCKNTWTQ 472
>UniRef50_Q6GZP4 Cluster: Transcription elongation factor SII; n=3;
Ranavirus|Rep: Transcription elongation factor SII -
Frog virus 3 (FV3)
Length = 92
Score = 42.7 bits (96), Expect = 0.007
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWT 558
CP C R Q QTR A+E M L+ +C+ C RWT
Sbjct: 55 CPGCGSRRVHALQRQTRSADEPMTLFAMCSECGKRWT 91
>UniRef50_A4S3C9 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 173
Score = 42.7 bits (96), Expect = 0.007
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC R+ ++Q QTR A+E M + C C +RW
Sbjct: 135 CGKCKQRKCTYYQLQTRSADEPMTTFVTCVECGNRW 170
>UniRef50_A3LRC5 Cluster: Predicted protein; n=5;
Saccharomycetales|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 294
Score = 42.7 bits (96), Expect = 0.007
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC H++ ++Q QTR A+E + + C +C +RW
Sbjct: 256 CGKCKHKKVSYYQMQTRSADEPLTTFCTCENCGNRW 291
>UniRef50_A7AWE5 Cluster: Transcription factor S-II (TFIIS)and
transcription factor S-II (TFIIS) central domain
containing protein; n=1; Babesia bovis|Rep:
Transcription factor S-II (TFIIS)and transcription
factor S-II (TFIIS) central domain containing protein -
Babesia bovis
Length = 302
Score = 42.3 bits (95), Expect = 0.009
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC+ E V++Q QTR ++E M + C C +RW
Sbjct: 265 CLKCHSMETVYYQLQTRSSDEPMTTFVTCLECNNRW 300
>UniRef50_A0CQT2 Cluster: Chromosome undetermined scaffold_24, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_24,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 42.3 bits (95), Expect = 0.009
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVV 411
+ FC C+N L E++++ C C Y + K M P +
Sbjct: 1 MNFCPICSNFL-SLENESSTGYRLKCPGCVY--------YHPLKEMRLTKTFQSKEPAPI 51
Query: 412 SDPTLPRT-KDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
+ P + D C KC +A F++ QTR A+E+ + + C C H+W
Sbjct: 52 TYPQQNKQITDEQCDKCGCLKAFFWEFQTRGADEQSTISFECIKCGHKW 100
>UniRef50_Q2FPF9 Cluster: Transcription factor S; n=3;
Euryarchaeota|Rep: Transcription factor S -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 107
Score = 42.3 bits (95), Expect = 0.009
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +1
Query: 238 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 417
FC++C +L N+ + C +C +++ + E+ ++ D S
Sbjct: 4 FCEKCGKLL------KNQAGSFICTSCGWEKEGHGETKMKITDKRKEKEIVIVD-DTESV 56
Query: 418 PTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTS--CKHRWTE 561
TLP T CP C + EA ++ Q R A+E ++ CT+ C H W E
Sbjct: 57 RTLP-TIAVKCPNCGNGEAFWWLRQLRSADESEVRFFRCTNSKCNHTWRE 105
>UniRef50_Q0UVI1 Cluster: Predicted protein; n=1; Phaeosphaeria
nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
(Septoria nodorum)
Length = 301
Score = 41.9 bits (94), Expect = 0.012
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 382 ELTHINPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
E ++N +V+ +K+ C KC + + Q QTR A+E M + C +C +RW
Sbjct: 241 EKENMNQAMVAQVEKSISKEFQCGKCKKKMVSYSQAQTRSADEPMTTFCECMNCGNRW 298
>UniRef50_P07273 Cluster: Transcription elongation factor S-II; n=5;
Saccharomycetales|Rep: Transcription elongation factor
S-II - Saccharomyces cerevisiae (Baker's yeast)
Length = 309
Score = 41.9 bits (94), Expect = 0.012
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +1
Query: 316 CDYKQLADSNCVYVNKIMHEVDELTHINPDVVSDPTLPR--TKDHMCPKCNHREAVFFQG 489
CD K LA + + +++E+ N T+ R T C KC ++ ++Q
Sbjct: 231 CDAKDLAPA------PLKQKIEEIAKQNLYNAQGATIERSVTDRFTCGKCKEKKVSYYQL 284
Query: 490 QTRRAEEEMRLYYVCTSCKHRW 555
QTR A+E + + C +C +RW
Sbjct: 285 QTRSADEPLTTFCTCEACGNRW 306
>UniRef50_Q0D7N2 Cluster: Os07g0229700 protein; n=4;
Magnoliophyta|Rep: Os07g0229700 protein - Oryza sativa
subsp. japonica (Rice)
Length = 379
Score = 41.5 bits (93), Expect = 0.016
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 433 TKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
T C +C R+ ++Q QTR A+E M + C +C + W
Sbjct: 336 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHW 376
>UniRef50_A7Q3Y6 Cluster: Chromosome chr13 scaffold_48, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr13 scaffold_48, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 309
Score = 41.5 bits (93), Expect = 0.016
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 433 TKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
T C +C R+ ++Q QTR A+E M + C +C + W
Sbjct: 266 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHW 306
>UniRef50_Q54YF5 Cluster: RNA polymerase I subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase I
subunit - Dictyostelium discoideum AX4
Length = 324
Score = 41.5 bits (93), Expect = 0.016
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Frame = +1
Query: 238 FCQECNNML-YPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHI---NPD 405
FC +CN L YP+ + C C + + S +NK + L + N +
Sbjct: 218 FCPQCNAFLNYPKNFSQH----ITCSLCTFSK---SKADLLNKKIVTKSSLFNKSIKNKE 270
Query: 406 VVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWT 558
++ D CP+C H + F QTR A+E ++Y C C +++
Sbjct: 271 EDNEEDRGAIIDEKCPECGHGKMYFKTAQTRSADEGQTIFYDCVKCSFKFS 321
>UniRef50_Q4UH96 Cluster: Transcription elongation factor, putative;
n=1; Theileria annulata|Rep: Transcription elongation
factor, putative - Theileria annulata
Length = 418
Score = 41.5 bits (93), Expect = 0.016
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KCN + ++Q QTR ++E M + C +C +RW
Sbjct: 381 CNKCNSKITTYYQLQTRSSDEPMTTFVTCLNCNNRW 416
>UniRef50_A0B7Y7 Cluster: Transcription factor TFIIS; n=1;
Methanosaeta thermophila PT|Rep: Transcription factor
TFIIS - Methanosaeta thermophila (strain DSM 6194 / PT)
(Methanothrixthermophila (strain DSM 6194 / PT))
Length = 85
Score = 41.5 bits (93), Expect = 0.016
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +1
Query: 307 CRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSDPT-LPRTKDHMCPKCNHREAVFF 483
CR C + SN N I+ ++L P + + LP TK CP+C + A ++
Sbjct: 3 CRKCGMRVPKSSN----NPIVSVTNKLERTVPVLEQESAGLPTTKAK-CPECGNDTAYWW 57
Query: 484 QGQTRRAEEEMRLYYVCTSCKHRWTE 561
Q R A+E ++ CT C + W E
Sbjct: 58 LRQLRAADESEVRFFRCTKCGNTWRE 83
>UniRef50_UPI0000E47C8A Cluster: PREDICTED: similar to
ENSANGP00000027484; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to ENSANGP00000027484
- Strongylocentrotus purpuratus
Length = 255
Score = 41.1 bits (92), Expect = 0.021
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC + + Q QTR A+E M + C C HRW
Sbjct: 217 CGKCRKKNCTYNQMQTRSADEPMTTFVFCNDCGHRW 252
>UniRef50_P49373 Cluster: Transcription elongation factor S-II; n=1;
Schizosaccharomyces pombe|Rep: Transcription elongation
factor S-II - Schizosaccharomyces pombe (Fission yeast)
Length = 293
Score = 41.1 bits (92), Expect = 0.021
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC ++ ++Q QTR A+E M + CT C +RW
Sbjct: 255 CGKCKQKKVSYYQMQTRSADEPMTTFCECTVCGNRW 290
>UniRef50_Q4T1I2 Cluster: Chromosome undetermined SCAF10575, whole
genome shotgun sequence; n=2; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF10575,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 147
Score = 40.7 bits (91), Expect = 0.028
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Frame = +1
Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYK-QLA--DSNCVYVNKIMHEVDELTHINP 402
+ FC EC N+L P ++ C C + +A D + +++ ++ +
Sbjct: 20 LNFCPECGNILPPPGLQDT----VRCPRCSFSIPVAEFDGQQIRSTVVLNPAEKSAAVVE 75
Query: 403 DVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
+ SD P D C +CN V+ Q R A+E +++ C C+ R E
Sbjct: 76 EEDSDLQGP-VIDRRCVRCNKEGMVYHTRQMRSADEGQTVFFTCVHCRRRTLE 127
>UniRef50_Q9YPH8 Cluster: Transcription elongation factor SII; n=8;
Chlorovirus|Rep: Transcription elongation factor SII -
Chlorella virus
Length = 180
Score = 40.7 bits (91), Expect = 0.028
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
C KC R+ +++ QTR A+E M ++ C SC RW +
Sbjct: 143 CGKCKSRKTSYYEMQTRSADEPMTVFAKCHSCGSRWKQ 180
>UniRef50_Q197A5 Cluster: Putative uncharacterized protein; n=1;
Aedes taeniorhynchus iridescent virus|Rep: Putative
uncharacterized protein - Aedes taeniorhynchus
iridescent virus
Length = 137
Score = 40.7 bits (91), Expect = 0.028
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
C KC+ + ++F QTR +E ++ C++CK RWTE
Sbjct: 100 CGKCDCTKILWFSKQTRSMDEPTTIFASCSNCKTRWTE 137
>UniRef50_A6RN27 Cluster: Transcription elongation factor S-II; n=6;
Pezizomycotina|Rep: Transcription elongation factor S-II
- Botryotinia fuckeliana B05.10
Length = 301
Score = 40.7 bits (91), Expect = 0.028
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC ++ + Q QTR A+E M + C C HRW
Sbjct: 263 CGKCGQKKVSYSQAQTRSADEPMTTFCECQVCGHRW 298
>UniRef50_P23193 Cluster: Transcription elongation factor A protein
1; n=41; Eumetazoa|Rep: Transcription elongation factor
A protein 1 - Homo sapiens (Human)
Length = 301
Score = 40.7 bits (91), Expect = 0.028
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC + + Q QTR A+E M + VC C +RW
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 298
>UniRef50_Q9VD81 Cluster: DNA-directed RNA polymerase subunit; n=8;
Endopterygota|Rep: DNA-directed RNA polymerase subunit -
Drosophila melanogaster (Fruit fly)
Length = 120
Score = 40.3 bits (90), Expect = 0.037
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Frame = +1
Query: 238 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 417
FC C ++L + K N + C NC + D VY + +P V +
Sbjct: 10 FCPSCGSILPELQVKGNVI----CYNCKKEFQPD---VYSGEKSEFTIHFNTYDPSKVFN 62
Query: 418 PTLPRTK--------DHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
T ++ + CPKCNH + + Q R A+E +++ C CK + +E
Sbjct: 63 RTKRESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESE 118
>UniRef50_Q7QQW3 Cluster: DNA-directed RNA polymerase subunit; n=2;
Giardia intestinalis|Rep: DNA-directed RNA polymerase
subunit - Giardia lamblia ATCC 50803
Length = 105
Score = 40.3 bits (90), Expect = 0.037
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
CP C +A + Q Q R ++E M +Y C C H+W E
Sbjct: 67 CPVCAFPDAFWIQMQIRSSDEPMSRFYRCCQCAHQWRE 104
>UniRef50_Q586X9 Cluster: Transcription elongation factor S-II,
putative; n=1; Trypanosoma brucei|Rep: Transcription
elongation factor S-II, putative - Trypanosoma brucei
Length = 467
Score = 40.3 bits (90), Expect = 0.037
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
CP+C+ RE + + Q R A+E + C CKH W+E
Sbjct: 429 CPECHGRECEWRELQIRSADEPTTKFIKCIKCKHNWSE 466
>UniRef50_Q1JT63 Cluster: Transcription elongation factor s-II,
putative; n=1; Toxoplasma gondii RH|Rep: Transcription
elongation factor s-II, putative - Toxoplasma gondii RH
Length = 418
Score = 40.3 bits (90), Expect = 0.037
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC + V+FQ QTR ++E M + C C +RW
Sbjct: 381 CFKCRTTKTVYFQMQTRSSDEPMTTFVTCLECGNRW 416
>UniRef50_A5JZL5 Cluster: Transcription elongation factor, putative;
n=5; Plasmodium|Rep: Transcription elongation factor,
putative - Plasmodium vivax
Length = 435
Score = 40.3 bits (90), Expect = 0.037
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 430 RTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
R + C KC E V+ Q QTR ++E M + C C +RW
Sbjct: 392 RKGEFQCFKCKGYETVYHQLQTRSSDEPMTTFVTCLKCNNRW 433
>UniRef50_Q22CT1 Cluster: Transcription factor S-II; n=1;
Tetrahymena thermophila SB210|Rep: Transcription factor
S-II - Tetrahymena thermophila SB210
Length = 136
Score = 39.9 bits (89), Expect = 0.048
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWT 558
CP C H F+ QTR A+E ++Y C CK ++T
Sbjct: 97 CPDCGHDTLYFWTVQTRSADEGSTVFYECQDCKFKFT 133
>UniRef50_Q6C6I8 Cluster: Similar to DEHA0C15686g Debaryomyces
hansenii; n=1; Yarrowia lipolytica|Rep: Similar to
DEHA0C15686g Debaryomyces hansenii - Yarrowia lipolytica
(Candida lipolytica)
Length = 295
Score = 39.9 bits (89), Expect = 0.048
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +1
Query: 358 NKIMHEVDELTHINPDVVSDPTLPR--TKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYV 531
+++ E++E+ N T R T C KC ++ ++Q QTR A+E + +
Sbjct: 225 DELKKEIEEMEKQNLFAARGATEQRAVTDRFTCGKCKQKKVSYYQMQTRSADEPLTTFCT 284
Query: 532 CTSCKHRW 555
C +C RW
Sbjct: 285 CENCGTRW 292
>UniRef50_Q2U4B9 Cluster: Transcription elongation factor
TFIIS/Cofactor of enhancer-binding protein Sp1; n=8;
Eurotiomycetidae|Rep: Transcription elongation factor
TFIIS/Cofactor of enhancer-binding protein Sp1 -
Aspergillus oryzae
Length = 304
Score = 39.9 bits (89), Expect = 0.048
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
C KC R+ + + QTR A+E M L+ C +C W +
Sbjct: 267 CGKCGQRKVTYTEAQTRSADEPMTLFCTCLNCGKSWKQ 304
>UniRef50_Q8SSB3 Cluster: DNA-DIRECTED RNA POLYMERASE III 12.5kDa
SUBUNIT; n=1; Encephalitozoon cuniculi|Rep: DNA-DIRECTED
RNA POLYMERASE III 12.5kDa SUBUNIT - Encephalitozoon
cuniculi
Length = 104
Score = 39.5 bits (88), Expect = 0.064
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +1
Query: 328 QLADSNCVYVNKIMHEVDELTHINPD-----VVSDPTLPR-TKDHMCPKCNHREAVFFQG 489
+L+ C Y+ I E+ + P V D +L TK +C E F +
Sbjct: 21 ELSCKMCGYLYAISEEISRTVGMTPKKSEGFVDEDESLKFVTKCGKRCECGSEEVSFVEL 80
Query: 490 QTRRAEEEMRLYYVCTSCKHRWTE 561
QTR A+E M ++Y C CK W E
Sbjct: 81 QTRSADEPMTIFYKCIRCKKVWKE 104
>UniRef50_O75764 Cluster: Transcription elongation factor A protein
3; n=21; Eutheria|Rep: Transcription elongation factor A
protein 3 - Homo sapiens (Human)
Length = 348
Score = 39.5 bits (88), Expect = 0.064
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC + + Q QTR A+E M + +C C +RW
Sbjct: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 345
>UniRef50_Q15560 Cluster: Transcription elongation factor A protein
2; n=55; Coelomata|Rep: Transcription elongation factor
A protein 2 - Homo sapiens (Human)
Length = 299
Score = 39.5 bits (88), Expect = 0.064
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC + + Q QTR ++E M + VC C +RW
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 296
>UniRef50_Q98TK0 Cluster: RNA polymerase III smallest subunit; n=1;
Platichthys flesus|Rep: RNA polymerase III smallest
subunit - Platichthys flesus (European flounder)
Length = 87
Score = 39.1 bits (87), Expect = 0.085
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = +1
Query: 277 DKNNKVLLYACRNCDYKQLADSNCVYVN-KIMHEVDELTHINPDVVSDPTLPRTKDHMCP 453
++ K + +AC C Y Y + EVD++ + + P T CP
Sbjct: 6 EEGQKCMRFACNTCPYVHSITRKVNYRKFPKLKEVDDVLGGAKAWENVDSTPET----CP 61
Query: 454 KCNHREAVFFQGQTRRAEEEMRLYY 528
C H A F Q QTR A+E M +Y
Sbjct: 62 TCGHLRAYFMQIQTRSADEPMTTFY 86
>UniRef50_Q6P0U5 Cluster: Zgc:77732; n=4; Clupeocephala|Rep:
Zgc:77732 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 409
Score = 39.1 bits (87), Expect = 0.085
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC + + Q QTR A+E M + +C C +RW
Sbjct: 371 CGKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 406
>UniRef50_Q4TIF2 Cluster: Chromosome undetermined SCAF2195, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF2195,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 255
Score = 39.1 bits (87), Expect = 0.085
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC + + Q QTR A+E M + +C C +RW
Sbjct: 219 CGKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRW 254
>UniRef50_Q0DP65 Cluster: Os03g0711700 protein; n=4; Oryza
sativa|Rep: Os03g0711700 protein - Oryza sativa subsp.
japonica (Rice)
Length = 156
Score = 39.1 bits (87), Expect = 0.085
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 433 TKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
T + C KC + E ++ Q R A+E ++Y C +C+H + E
Sbjct: 112 TVNKECEKCKNPELQYYTKQLRSADEGQTVFYKCANCRHEFNE 154
>UniRef50_Q5CVE1 Cluster: Transcription elongation factor TFIIS;
n=2; Cryptosporidium|Rep: Transcription elongation
factor TFIIS - Cryptosporidium parvum Iowa II
Length = 332
Score = 39.1 bits (87), Expect = 0.085
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC + ++Q QTR A+E M + C +C +RW
Sbjct: 295 CGKCKTNKTTYYQMQTRSADEPMTTFVRCLNCGNRW 330
>UniRef50_Q4CXN7 Cluster: Transcription elongation factor S-II,
putative; n=2; Trypanosoma cruzi|Rep: Transcription
elongation factor S-II, putative - Trypanosoma cruzi
Length = 477
Score = 39.1 bits (87), Expect = 0.085
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWT 558
CP C +++ QTR A+E + C CK+ WT
Sbjct: 439 CPNCGKNRCSYYEQQTRSADEPTTKFVTCLECKYVWT 475
>UniRef50_O94703 Cluster: DNA-directed RNA polymerase I subunit
RPA12; n=1; Schizosaccharomyces pombe|Rep: DNA-directed
RNA polymerase I subunit RPA12 - Schizosaccharomyces
pombe (Fission yeast)
Length = 119
Score = 39.1 bits (87), Expect = 0.085
Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Frame = +1
Query: 238 FCQECNNMLYPREDKNNKVLLYACRNCD--YKQLADSNCVYVNK----IMHEVDELTHIN 399
FC EC N+L ++ C C Y +N V K +L H
Sbjct: 9 FCSECGNLL-----ESTTAQWTTCDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSI 63
Query: 400 PDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWT 558
V S T + CPKC + F Q R A+E ++Y C C ++++
Sbjct: 64 VQVESQKEEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFS 116
>UniRef50_UPI00005A4643 Cluster: PREDICTED: similar to Transcription
elongation factor A protein 2 (Transcription elongation
factor S-II protein 2) (Testis-specific S-II)
(Transcription elongation factor TFIIS.l); n=1; Canis
lupus familiaris|Rep: PREDICTED: similar to
Transcription elongation factor A protein 2
(Transcription elongation factor S-II protein 2)
(Testis-specific S-II) (Transcription elongation factor
TFIIS.l) - Canis familiaris
Length = 451
Score = 38.7 bits (86), Expect = 0.11
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C +C + + Q QTR ++E M + VC C +RW
Sbjct: 413 CGRCRRKNCTYTQVQTRSSDEPMTTFVVCNECGNRW 448
>UniRef50_Q9DGD2 Cluster: Transcription elongation factor XSII-K1;
n=7; Euteleostomi|Rep: Transcription elongation factor
XSII-K1 - Xenopus laevis (African clawed frog)
Length = 645
Score = 38.7 bits (86), Expect = 0.11
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC + + Q QTR A+E M + +C C +RW
Sbjct: 607 CEKCKKKNCSYNQVQTRSADEPMTTFVLCNECGNRW 642
>UniRef50_Q9GZ09 Cluster: Transcription elongation factor TFIIS;
n=2; Moneuplotes crassus|Rep: Transcription elongation
factor TFIIS - Euplotes crassus
Length = 328
Score = 38.3 bits (85), Expect = 0.15
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 442 HMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKH 549
+ C KC ++ F++ QTR A+E M + C C H
Sbjct: 289 YTCEKCKSKKTTFYEQQTRSADEPMTTFVQCLMCSH 324
>UniRef50_A4R9N1 Cluster: Predicted protein; n=1; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 115
Score = 38.3 bits (85), Expect = 0.15
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 3/115 (2%)
Frame = +1
Query: 226 VGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHI-NP 402
+ IQFC +C + L P N +V C N + L + V ++ L N
Sbjct: 1 MAIQFCNDCGDTL-PISG-NPEVKCDCCGNMNKNTLINVTTVSSSRDFDSPLRLKEYGNK 58
Query: 403 DVV-SDPTLPRTK-DHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
D + S P + D C C + + QTR A+E ++Y C C +W E
Sbjct: 59 DAMASRPEMNWPSIDENCRFCPSKTVRYTTLQTRGADEGSTVFYFCEGCSQKWKE 113
>UniRef50_A0EDT1 Cluster: Chromosome undetermined scaffold_90, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_90,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 317
Score = 37.9 bits (84), Expect = 0.20
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +1
Query: 424 LPRTKDHMCPKCNHREAVFFQG-QTRRAEEEMRLYYVCTSCKHRW 555
+ ++K CP+C++ + Q RRA+E ++Y C +C+HR+
Sbjct: 271 MTQSKGQECPRCHNNYLYIIETKQIRRADEPATIFYECFACQHRY 315
>UniRef50_A5UYN5 Cluster: Protein kinase; n=1; Roseiflexus sp.
RS-1|Rep: Protein kinase - Roseiflexus sp. RS-1
Length = 544
Score = 37.1 bits (82), Expect = 0.34
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +1
Query: 424 LPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
L R+ D MCP+C R+ V + + R+AEE R YVC+ C TE
Sbjct: 182 LARSLDFMCPRC--RKEV--EAELRQAEERSRERYVCSECGQDVTE 223
>UniRef50_Q4N7G2 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria parva
Length = 252
Score = 37.1 bits (82), Expect = 0.34
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 430 RTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHR 552
+T + C KC H ++ Q R A+E M + Y C CK+R
Sbjct: 207 QTVKYNCEKCGHDTHLYSTFQARSADEGMSIMYECIKCKNR 247
>UniRef50_UPI0000499ED2 Cluster: hypothetical protein 230.t00020;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
protein 230.t00020 - Entamoeba histolytica HM-1:IMSS
Length = 78
Score = 36.7 bits (81), Expect = 0.45
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = +1
Query: 379 DELTHINPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
DE NP +S +P + C KC R+ QTR A+E M + C SC W
Sbjct: 18 DEEDKRNPIDIS--RIPDNNEFKCGKCGSRKIQETLAQTRSADEPMTRFLTCASCGFFW 74
>UniRef50_A2EHZ7 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 126
Score = 36.7 bits (81), Expect = 0.45
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
Frame = +1
Query: 238 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 417
FC C ++ P + + V + D K L S KI+ E DE+T S
Sbjct: 26 FCTFCGTLV-PISNVGHMVCPLCKKAFDGKALQFSEKTV--KIVKEADEIT-------SK 75
Query: 418 PTLPRTK-DHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
L R+ CP+C F Q R A+E ++Y C C +R+++
Sbjct: 76 QGLARSIIKEKCPECGEEGLYFTTAQIRSADEGQTIFYECIHCGYRFSQ 124
>UniRef50_P52652 Cluster: Putative transcription elongation factor
S-II; n=2; Caenorhabditis|Rep: Putative transcription
elongation factor S-II - Caenorhabditis elegans
Length = 308
Score = 36.7 bits (81), Expect = 0.45
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC + + Q QTR ++E M + C C +RW
Sbjct: 270 CGKCGKKNCTYTQLQTRSSDEPMTTFVFCLECGNRW 305
>UniRef50_P32529 Cluster: DNA-directed RNA polymerase I subunit
RPA12; n=12; Saccharomycetales|Rep: DNA-directed RNA
polymerase I subunit RPA12 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 125
Score = 36.7 bits (81), Expect = 0.45
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
CP+C + E + Q R A+E ++Y CTSC +++
Sbjct: 86 CPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGYKF 121
>UniRef50_Q5UQS8 Cluster: TFII-like transcription factor; n=1;
Acanthamoeba polyphaga mimivirus|Rep: TFII-like
transcription factor - Mimivirus
Length = 173
Score = 36.3 bits (80), Expect = 0.60
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Frame = +1
Query: 256 NMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVN-KIMHEVDELTHINPDVVSDPTLPR 432
N+++ +D+NN + + D + N ++N + +++ + + I +++ TL +
Sbjct: 66 NIMFNLKDENNHTIKKIKKLIDKNKYNAYNLAFLNPEELNKDNWIKIIARKQMTEETLNQ 125
Query: 433 TKD---HMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSC 543
C C + F+Q QTR A+E M +Y+C +C
Sbjct: 126 MATVEWKPCYACKNTSYHFYQLQTRSADEPMTTFYICKNC 165
>UniRef50_Q4A328 Cluster: Transcription factor S-II (TFIIS) family
protein; n=1; Emiliania huxleyi virus 86|Rep:
Transcription factor S-II (TFIIS) family protein -
Emiliania huxleyi virus 86
Length = 150
Score = 35.9 bits (79), Expect = 0.79
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC E + QTR A+E +++ C C +W
Sbjct: 112 CNKCGSSEILMAMAQTRSADEGTTMFFRCVKCNQKW 147
>UniRef50_Q4Q100 Cluster: Transcription factor S-II-like protein;
n=3; Leishmania|Rep: Transcription factor S-II-like
protein - Leishmania major
Length = 254
Score = 35.9 bits (79), Expect = 0.79
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 436 KDHMCPKCN-HREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
++ C C HR F QTR A+E +++ CT C W +
Sbjct: 210 EEAFCEMCGVHRPCKTFARQTRSADEGQTIFFQCTKCSSEWQQ 252
>UniRef50_A1CED1 Cluster: DNA-directed RNA polymerase subunit; n=7;
Pezizomycotina|Rep: DNA-directed RNA polymerase subunit
- Aspergillus clavatus
Length = 147
Score = 35.9 bits (79), Expect = 0.79
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 4/110 (3%)
Frame = +1
Query: 238 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDEL----THINPD 405
FC +C N+L KVLL K + V +K L + +
Sbjct: 9 FCTDCGNLLPESTGDPTKVLLCDVCGARNKDTVPNTIVSESKPNAFPSALRAKRSAVQTL 68
Query: 406 VVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
D H C +C +E F Q R A+E ++Y C C +++
Sbjct: 69 TAEDKRTEALTQHTCARCGRKEMYFTTVQLRSADEGSTVFYTCV-CGYKY 117
>UniRef50_UPI0000161EFD Cluster: Transcription factor SII homolog;
n=1; Lymphocystis disease virus 1|Rep: Transcription
factor SII homolog - Lymphocystis disease virus 1
Length = 89
Score = 35.1 bits (77), Expect = 1.4
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +1
Query: 358 NKIMHEVDELTHINPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCT 537
N+++ E ++ +NP V L C KC + QTR A+E M L +C
Sbjct: 28 NRLIEEHEDNYFLNPIEVEKGILK------CRKCKKTKIFSTHVQTRSADEPMSLIAMCY 81
Query: 538 SCKHRW 555
SC ++W
Sbjct: 82 SCGYKW 87
>UniRef50_Q2P9W0 Cluster: RNA polymerase I subunit RPA12; n=2;
Trypanosoma brucei|Rep: RNA polymerase I subunit RPA12 -
Trypanosoma brucei brucei
Length = 151
Score = 35.1 bits (77), Expect = 1.4
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 436 KDHMCPKCN-HREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
++ C KC R+ F Q R A+E ++Y CTSC W
Sbjct: 107 EEAFCEKCGVPRKCKVFARQIRSADEGQTVFYQCTSCDSEW 147
>UniRef50_A7ARU9 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 256
Score = 35.1 bits (77), Expect = 1.4
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 445 MCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHR 552
+C C EA + Q R A+E M + Y C CK+R
Sbjct: 216 LCDNCGFEEAYYSTFQARSADEGMTVMYECKRCKNR 251
>UniRef50_Q2UH76 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 122
Score = 35.1 bits (77), Expect = 1.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHR 552
C KC ++ + Q Q R A+E ++Y C C HR
Sbjct: 88 CVKCPSKDVTYSQVQLRSADEGSTIFYNCLKCGHR 122
>UniRef50_UPI00006CA3DD Cluster: Response regulator receiver domain
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: Response regulator receiver domain containing
protein - Tetrahymena thermophila SB210
Length = 1434
Score = 34.7 bits (76), Expect = 1.8
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Frame = +1
Query: 160 FKINSKEMSAISLSRKDGGPGYVGIQFCQECNNMLYPREDKNNK-----VLLYACRNCDY 324
FK+N+K+ S+ + ++F Q CNN+ ED + K + L + + +
Sbjct: 1040 FKLNAKDQKPKSIYNRQ-----CSLEFQQLCNNLTSTEEDCSEKKQAISIPLMSTKILEE 1094
Query: 325 KQLADSNCVYVNKIMHEVDELTHIN 399
K L+ +NC + +H TH+N
Sbjct: 1095 KNLSANNCGSNQQFIHHTQSDTHLN 1119
>UniRef50_UPI000049984E Cluster: DNA-directed RNA polymerase I
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase I subunit - Entamoeba
histolytica HM-1:IMSS
Length = 122
Score = 34.7 bits (76), Expect = 1.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWT 558
CP C + + Q R +E +YY C +C H+ T
Sbjct: 83 CPNCGNETMHYHSAQVRSVDEGQTVYYECPNCGHQET 119
>UniRef50_Q91FH5 Cluster: 349L; n=1; Invertebrate iridescent virus
6|Rep: 349L - Chilo iridescent virus (CIV) (Insect
iridescent virus type 6)
Length = 140
Score = 34.7 bits (76), Expect = 1.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 454 KCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
KC F QTR +E ++ +C+SCK +W
Sbjct: 105 KCGSERVFSFSKQTRSGDESTSVFALCSSCKSKW 138
>UniRef50_Q06VI2 Cluster: Putative uncharacterized protein; n=1;
Trichoplusia ni ascovirus 2c|Rep: Putative
uncharacterized protein - Trichoplusia ni ascovirus 2c
Length = 85
Score = 34.7 bits (76), Expect = 1.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
C +CN + Q R +E M ++ +C++C RWT+
Sbjct: 48 CNRCNSHKIHCTARQVRGGDEPMTVFAICSNCGKRWTQ 85
>UniRef50_Q4QDH9 Cluster: RNA polymerase III C11 subunit, putative;
n=3; Leishmania|Rep: RNA polymerase III C11 subunit,
putative - Leishmania major
Length = 151
Score = 34.7 bits (76), Expect = 1.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 457 CNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
C +A F Q Q R A+E +++ C C H+W +
Sbjct: 116 CQSTKAYFIQIQMRSADEPATVFFKCVECGHQWRQ 150
>UniRef50_Q0IWP7 Cluster: Os10g0496000 protein; n=7;
Viridiplantae|Rep: Os10g0496000 protein - Oryza sativa
subsp. japonica (Rice)
Length = 333
Score = 33.9 bits (74), Expect = 3.2
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = +1
Query: 418 PTLPRTKDHMCPKCNHREAVF-FQGQTRRAEEEMRLYYVCTSCKHRWTE 561
P LPR CP+C F + R + Y+C +C+ WTE
Sbjct: 156 PPLPRPPPRQCPRCGSANTKFCYYNNYSRTQPR----YLCKACRRHWTE 200
>UniRef50_Q9W137 Cluster: CG4707-PA; n=2; Sophophora|Rep: CG4707-PA
- Drosophila melanogaster (Fruit fly)
Length = 673
Score = 33.9 bits (74), Expect = 3.2
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Frame = +1
Query: 250 CNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSDPTLP 429
C + R+ VL++ +N D+ + V+ + EV E TH NP+V ++P
Sbjct: 365 CGRKFHLRKALAEHVLVH--KNPDHFMCSQCGRVFQDSRALEVHEQTHTNPEVKAEPKEK 422
Query: 430 RT-KDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHR 552
R + CPK +A + + Y C C +
Sbjct: 423 RIYQCEKCPKSFTTKAAMEYHDVSKHVPKSEFKYSCPECNKK 464
>UniRef50_Q2RS91 Cluster: Putative uncharacterized protein; n=1;
Rhodospirillum rubrum ATCC 11170|Rep: Putative
uncharacterized protein - Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255)
Length = 382
Score = 33.5 bits (73), Expect = 4.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 442 HMCPKCNHREAVFFQGQTRRAEEEM 516
H+C C HRE VF G RR +E+
Sbjct: 297 HLCTNCGHREDVFSHGGARRTAQEL 321
>UniRef50_Q8I2A5 Cluster: Putative uncharacterized protein PFA0175w;
n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PFA0175w - Plasmodium falciparum
(isolate 3D7)
Length = 1817
Score = 33.5 bits (73), Expect = 4.2
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 277 DKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 417
DKNNK +LY+C C K L ++ KI ++ +L +I + D
Sbjct: 250 DKNNKQVLYSCLTCIIKNLLENTIKQNKKIKYKTLKLLYIILQKIQD 296
>UniRef50_Q7RCT6 Cluster: Putative transcription factor; n=2;
Plasmodium (Vinckeia)|Rep: Putative transcription factor
- Plasmodium yoelii yoelii
Length = 383
Score = 33.5 bits (73), Expect = 4.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWT 558
C C+H F QTR A+E + Y C +CK + T
Sbjct: 344 CTDCDHDFLYFVNIQTRSADEGSTIIYYCPNCKKQTT 380
>UniRef50_Q4N3V9 Cluster: Putative uncharacterized protein; n=1;
Theileria parva|Rep: Putative uncharacterized protein -
Theileria parva
Length = 197
Score = 33.5 bits (73), Expect = 4.2
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = -3
Query: 580 CKRALSTLSIYVYNLYTHNTISFLLRRVSSGLERILLLCD 461
C++++ LS+ +YNL TH T+ + V+ + +L+LC+
Sbjct: 84 CRKSIKQLSLLLYNLITHATVKLSVVNVAESVS-VLVLCN 122
>UniRef50_Q4DDP9 Cluster: DNA-directed RNA polymerase, putative;
n=2; Trypanosoma cruzi|Rep: DNA-directed RNA polymerase,
putative - Trypanosoma cruzi
Length = 158
Score = 33.5 bits (73), Expect = 4.2
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 436 KDHMCPKCN-HREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
++ C C HR+ F Q R A+E ++Y C +C W
Sbjct: 114 EEAFCGTCGVHRQCKVFARQIRSADEGQTIFYQCITCNAEW 154
>UniRef50_P27948 Cluster: Transcription factor S-II-related protein;
n=2; African swine fever virus|Rep: Transcription factor
S-II-related protein - African swine fever virus (strain
BA71V) (ASFV)
Length = 243
Score = 33.5 bits (73), Expect = 4.2
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +1
Query: 367 MHEVDELTHINPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCK 546
+ E E+T + V++ T ++ + CP C R + + QTR +E ++ C C
Sbjct: 182 LKEKTEITLRSQQKVAEKT---SQLYKCPNCKQRMCTYREVQTRALDEPSTIFCTCKKCG 238
Query: 547 HRW 555
H +
Sbjct: 239 HEF 241
>UniRef50_Q8BZN1 Cluster: Adult male diencephalon cDNA, RIKEN
full-length enriched library, clone:9330155M09
product:hypothetical Tyrosine-rich region containing
protein, full insert sequence; n=3; Eukaryota|Rep: Adult
male diencephalon cDNA, RIKEN full-length enriched
library, clone:9330155M09 product:hypothetical
Tyrosine-rich region containing protein, full insert
sequence - Mus musculus (Mouse)
Length = 158
Score = 33.1 bits (72), Expect = 5.6
Identities = 15/92 (16%), Positives = 48/92 (52%)
Frame = -1
Query: 417 VAYYIRVYMRQFVYLVHNFVDVNAI*IRKLFIITISARVQQNFVIFIFARVKHIVTFLTK 238
++ Y+ +Y+ F+Y + ++D+ R + ++I + + + I+ + ++ F
Sbjct: 62 LSIYLSIYLSIFIYFMCVYLDIIYF-YRSIMCLSICLSIYLSIYLSIYLHLLYVCLFRYN 120
Query: 237 LYADITRTAVFST*AYSTHFLTVNFKMSYSKI 142
L+ I +++ + Y + +L+++F +S + +
Sbjct: 121 LFLSIYHVSIYLS-IYLSIYLSISFYLSDANV 151
>UniRef50_Q22LQ6 Cluster: Cation channel family protein; n=1;
Tetrahymena thermophila SB210|Rep: Cation channel family
protein - Tetrahymena thermophila SB210
Length = 1324
Score = 33.1 bits (72), Expect = 5.6
Identities = 18/73 (24%), Positives = 29/73 (39%)
Frame = +1
Query: 274 EDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSDPTLPRTKDHMCP 453
+ K+N Y N DY Q +++ C K+ + L D + D K +
Sbjct: 964 QQKSNNNFQYTVNNDDYSQSSNNGCTQCKKVYFSIKSL----QDKIVDDDQGDNKSQLTQ 1019
Query: 454 KCNHREAVFFQGQ 492
+C H + V Q Q
Sbjct: 1020 QCQHSQFVTQQNQ 1032
>UniRef50_Q22BS3 Cluster: Putative uncharacterized protein; n=2;
Alveolata|Rep: Putative uncharacterized protein -
Tetrahymena thermophila SB210
Length = 2087
Score = 33.1 bits (72), Expect = 5.6
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
Frame = +1
Query: 229 GIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQ--LADSNCVYVNKIMHEVDELTHINP 402
GI+ C C Y E+ K C+ CD + DSN + ++
Sbjct: 963 GIENCATCKGGFYFFEESGKKT----CKFCDENKGFFIDSNS-FCKPCHQSCSTCIGLSS 1017
Query: 403 DVVSD--PTLPRTKDHMCPKCNHREAVFFQGQTRRAE 507
+ S+ L RTKD C +CN +F + +T+ E
Sbjct: 1018 NQCSNCKSGLHRTKDSTCIECNSSNGLFIENETQMCE 1054
>UniRef50_A0DNJ2 Cluster: Chromosome undetermined scaffold_58, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_58,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 3634
Score = 33.1 bits (72), Expect = 5.6
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = +1
Query: 238 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 417
+ Q+CN Y +++N Y C NC AD NCV + + + E+ IN VV
Sbjct: 438 YFQQCNQGQYTIDNENCLNCHYNCYNC--LNQAD-NCVECHN-GYYILEVNQINNCVVEC 493
Query: 418 PTLPRTKDHMCPKCN 462
P ++ C KCN
Sbjct: 494 PLSYYVQNKQCLKCN 508
>UniRef50_Q54YG9 Cluster: RNA polymerase II elongation factor; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase II
elongation factor - Dictyostelium discoideum AX4
Length = 319
Score = 32.7 bits (71), Expect = 7.3
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 433 TKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVC--TSCKHRW 555
T C KC R+ + Q QTR A+E + C C +RW
Sbjct: 274 TDQFQCGKCKQRKCTYTQLQTRSADEPPTTFVKCCVKGCGNRW 316
>UniRef50_Q8SS71 Cluster: TRANSCRIPTION ELONGATION FACTOR SII; n=1;
Encephalitozoon cuniculi|Rep: TRANSCRIPTION ELONGATION
FACTOR SII - Encephalitozoon cuniculi
Length = 257
Score = 32.7 bits (71), Expect = 7.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC R+ + Q QTR +E M + C C ++W
Sbjct: 220 CSKCGERKCSYRQLQTRSGDEPMTTFVTC-ECGNKW 254
>UniRef50_Q1QVV2 Cluster: ATPase-like protein; n=1; Chromohalobacter
salexigens DSM 3043|Rep: ATPase-like protein -
Chromohalobacter salexigens (strain DSM 3043 / ATCC
BAA-138 / NCIMB13768)
Length = 1289
Score = 32.3 bits (70), Expect = 9.7
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Frame = +1
Query: 322 YKQLAD---SNCVY-VNKIMHEVDELTHINP---DVVSDPTLPRTKDH--MCPKCNHREA 474
YK+LAD +NC Y +I H + L I+P +V D LP + DH + C H
Sbjct: 990 YKRLADYARANCEYWAGRIRHAFEHLEEIDPLHQPMVLD-WLPFS-DHPQVAAACYHAWT 1047
Query: 475 VFFQGQTRRAEEEMR-LYYVCTSCKH 549
+ +G RRAE+++ + S KH
Sbjct: 1048 ICLRGDYRRAEQQIEAAIRLAESIKH 1073
>UniRef50_Q5UQ21 Cluster: Uncharacterized protein L208; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Uncharacterized
protein L208 - Mimivirus
Length = 192
Score = 32.3 bits (70), Expect = 9.7
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 3/94 (3%)
Frame = +1
Query: 283 NNKVLLYACRNC-DYKQLADSNCVYVNKIMHEVDELTHINPDVVSDPTLPRTKDHMCPK- 456
N + C+ C +Y+ + +Y + + D TL RTK+++C
Sbjct: 95 NTNKAYFICKYCKNYRPIEAGTTIYTKNYDTTDNSDIENYSFYIHDHTLQRTKNYICKNK 154
Query: 457 -CNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C + + +L YVCT+C W
Sbjct: 155 DCKTHQNDNLKEAVLAKNSADQLVYVCTACTTHW 188
>UniRef50_Q06AK7 Cluster: DNA topoisomerase 1; n=69; Firmicutes|Rep:
DNA topoisomerase 1 - Staphylococcus aureus
Length = 689
Score = 32.3 bits (70), Expect = 9.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 241 CQECNNMLYPREDKNNKVLLYACRNCDYKQLA 336
C +CN L E+K K C NCDYK+ A
Sbjct: 658 CPKCNQYLV--ENKKGKTTQVICSNCDYKEAA 687
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 558,278,484
Number of Sequences: 1657284
Number of extensions: 10573272
Number of successful extensions: 26455
Number of sequences better than 10.0: 164
Number of HSP's better than 10.0 without gapping: 25401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26392
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -