Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2j08
(624 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014297-1835|AAF55045.1| 129|Drosophila melanogaster CG3284-PA... 237 9e-63
S66940-1|AAB29028.2| 129|Drosophila melanogaster RNA polymerase... 234 8e-62
S88139-1|AAB21674.1| 129|Drosophila melanogaster RNA polymerase... 232 2e-61
AE013599-3053|AAM68394.2| 108|Drosophila melanogaster CG33785-P... 59 4e-09
X53670-1|CAA37710.1| 313|Drosophila melanogaster protein ( Dros... 40 0.002
L26091-1|AAA92864.2| 313|Drosophila melanogaster transcription ... 40 0.002
AY051843-1|AAK93267.1| 313|Drosophila melanogaster LD34766p pro... 40 0.002
AE014297-3039|AAF55918.1| 120|Drosophila melanogaster CG13418-P... 40 0.002
AE014134-2559|AAF53436.1| 313|Drosophila melanogaster CG3710-PA... 40 0.002
AY051772-1|AAK93196.1| 673|Drosophila melanogaster LD29879p pro... 34 0.18
AE013599-3917|AAF47240.1| 673|Drosophila melanogaster CG4707-PA... 34 0.18
AY119065-1|AAM50925.1| 186|Drosophila melanogaster LP07781p pro... 30 2.9
AE014297-3069|AAF55935.1| 186|Drosophila melanogaster CG17819-P... 30 2.9
BT001614-1|AAN71369.1| 867|Drosophila melanogaster RE33889p pro... 29 6.8
AE013599-3901|AAF47228.1| 867|Drosophila melanogaster CG11414-P... 29 6.8
>AE014297-1835|AAF55045.1| 129|Drosophila melanogaster CG3284-PA
protein.
Length = 129
Score = 237 bits (580), Expect = 9e-63
Identities = 100/118 (84%), Positives = 110/118 (93%), Gaps = 2/118 (1%)
Frame = +1
Query: 214 GPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTH 393
GPG+VGI+FCQECNNMLYP+EDK NK+LLYACRNCDYKQ ADSNC+YVNKIMHE+DELTH
Sbjct: 12 GPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTH 71
Query: 394 INPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCT--SCKHRWTE 561
I PDV+SDPTLPRT+DH CPKC+HREAVFFQ QTRRAEEEMRLYYVCT +C HRWTE
Sbjct: 72 IVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>S66940-1|AAB29028.2| 129|Drosophila melanogaster RNA polymerase II
subunit 9 protein.
Length = 129
Score = 234 bits (572), Expect = 8e-62
Identities = 99/118 (83%), Positives = 109/118 (92%), Gaps = 2/118 (1%)
Frame = +1
Query: 214 GPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTH 393
GPG+VGI+FCQECNNMLYP+EDK NK+LLYACRNCDYKQ ADSNC+YVNKIMHE+DELTH
Sbjct: 12 GPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQEADSNCIYVNKIMHEIDELTH 71
Query: 394 INPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCT--SCKHRWTE 561
I PDV+SDPTLPRT+DH CPKC+HREAV FQ QTRRAEEEMRLYYVCT +C HRWTE
Sbjct: 72 IVPDVISDPTLPRTEDHACPKCSHREAVSFQAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>S88139-1|AAB21674.1| 129|Drosophila melanogaster RNA polymerase II
15-kda subunit protein.
Length = 129
Score = 232 bits (568), Expect = 2e-61
Identities = 97/118 (82%), Positives = 109/118 (92%), Gaps = 2/118 (1%)
Frame = +1
Query: 214 GPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTH 393
GPG+VGI+FCQECNNMLYP+EDK NK+LLYACRNCDYKQ +SNC+YVNKIMHE+DELTH
Sbjct: 12 GPGFVGIRFCQECNNMLYPKEDKENKILLYACRNCDYKQKTNSNCIYVNKIMHEIDELTH 71
Query: 394 INPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCT--SCKHRWTE 561
I PDV+SDPTLPRT+DH CPKC+HREAVFF+ QTRRAEEEMRLYYVCT +C HRWTE
Sbjct: 72 IVPDVISDPTLPRTEDHACPKCSHREAVFFKAQTRRAEEEMRLYYVCTNQNCTHRWTE 129
>AE013599-3053|AAM68394.2| 108|Drosophila melanogaster CG33785-PA,
isoform A protein.
Length = 108
Score = 59.3 bits (137), Expect = 4e-09
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Frame = +1
Query: 238 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 417
FC C N+L ED N + C C Y ++ K + E+ H+ +
Sbjct: 4 FCPSCGNILIIEEDTNCH--RFTCNTCPY--ISKIRRKISTKTFPRLKEVDHVLGGKAAW 59
Query: 418 PTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTS--CKHRWTE 561
+ T D CP C H+ A F Q QTR A+E M +Y C + C H W +
Sbjct: 60 ENVDST-DAECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTWRD 108
>X53670-1|CAA37710.1| 313|Drosophila melanogaster protein (
Drosophila gene forRNA polymerase II elongation factor
DmS-II. ).
Length = 313
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC R + Q QTR A+E M + +C C +RW
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRW 310
>L26091-1|AAA92864.2| 313|Drosophila melanogaster transcription
elongation factor protein.
Length = 313
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC R + Q QTR A+E M + +C C +RW
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRW 310
>AY051843-1|AAK93267.1| 313|Drosophila melanogaster LD34766p
protein.
Length = 313
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC R + Q QTR A+E M + +C C +RW
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRW 310
>AE014297-3039|AAF55918.1| 120|Drosophila melanogaster CG13418-PA
protein.
Length = 120
Score = 40.3 bits (90), Expect = 0.002
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Frame = +1
Query: 238 FCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSD 417
FC C ++L + K N + C NC + D VY + +P V +
Sbjct: 10 FCPSCGSILPELQVKGNVI----CYNCKKEFQPD---VYSGEKSEFTIHFNTYDPSKVFN 62
Query: 418 PTLPRTK--------DHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRWTE 561
T ++ + CPKCNH + + Q R A+E +++ C CK + +E
Sbjct: 63 RTKRESESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESE 118
>AE014134-2559|AAF53436.1| 313|Drosophila melanogaster CG3710-PA
protein.
Length = 313
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
C KC R + Q QTR A+E M + +C C +RW
Sbjct: 275 CAKCKKRNCTYNQLQTRSADEPMTTFVMCNECGNRW 310
>AY051772-1|AAK93196.1| 673|Drosophila melanogaster LD29879p
protein.
Length = 673
Score = 33.9 bits (74), Expect = 0.18
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Frame = +1
Query: 250 CNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSDPTLP 429
C + R+ VL++ +N D+ + V+ + EV E TH NP+V ++P
Sbjct: 365 CGRKFHLRKALAEHVLVH--KNPDHFMCSQCGRVFQDSRALEVHEQTHTNPEVKAEPKEK 422
Query: 430 RT-KDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHR 552
R + CPK +A + + Y C C +
Sbjct: 423 RIYQCEKCPKSFTTKAAMEYHDVSKHVPKSEFKYSCPECNKK 464
>AE013599-3917|AAF47240.1| 673|Drosophila melanogaster CG4707-PA
protein.
Length = 673
Score = 33.9 bits (74), Expect = 0.18
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 1/102 (0%)
Frame = +1
Query: 250 CNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVVSDPTLP 429
C + R+ VL++ +N D+ + V+ + EV E TH NP+V ++P
Sbjct: 365 CGRKFHLRKALAEHVLVH--KNPDHFMCSQCGRVFQDSRALEVHEQTHTNPEVKAEPKEK 422
Query: 430 RT-KDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHR 552
R + CPK +A + + Y C C +
Sbjct: 423 RIYQCEKCPKSFTTKAAMEYHDVSKHVPKSEFKYSCPECNKK 464
>AY119065-1|AAM50925.1| 186|Drosophila melanogaster LP07781p
protein.
Length = 186
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 253 NNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHE 375
N ++P+ K VL++ + D +L+++ CV + +MH+
Sbjct: 78 NRQIWPKYYKKVNVLIFVLDSTDALRLSEARCVLCDVLMHQ 118
>AE014297-3069|AAF55935.1| 186|Drosophila melanogaster CG17819-PA
protein.
Length = 186
Score = 29.9 bits (64), Expect = 2.9
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +1
Query: 253 NNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHE 375
N ++P+ K VL++ + D +L+++ CV + +MH+
Sbjct: 78 NRQIWPKYYKKVNVLIFVLDSTDALRLSEARCVLCDVLMHQ 118
>BT001614-1|AAN71369.1| 867|Drosophila melanogaster RE33889p
protein.
Length = 867
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 439 DHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSC 543
DH CPKC+ F+G E +L Y C C
Sbjct: 137 DHPCPKCDAPPYRTFEGLRNHVRSEHKLLY-CDLC 170
>AE013599-3901|AAF47228.1| 867|Drosophila melanogaster CG11414-PA
protein.
Length = 867
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 439 DHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTSC 543
DH CPKC+ F+G E +L Y C C
Sbjct: 137 DHPCPKCDAPPYRTFEGLRNHVRSEHKLLY-CDLC 170
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,137,934
Number of Sequences: 53049
Number of extensions: 499602
Number of successful extensions: 1121
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2579793750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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