Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j08
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024880-8|AAK85514.1|  167|Caenorhabditis elegans Hypothetical ...   192   2e-49
AC024214-2|AAF36076.1|  108|Caenorhabditis elegans Hypothetical ...    52   4e-07
Z81035-6|CAB02739.1|  119|Caenorhabditis elegans Hypothetical pr...    49   3e-06
Z54216-1|CAA90943.1|  308|Caenorhabditis elegans Hypothetical pr...    37   0.013
U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U40413-6|AAK39173.2|  356|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z48334-5|CAA88312.1|  424|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AC024880-8|AAK85514.1|  167|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.5 protein.
          Length = 167

 Score =  192 bits (468), Expect = 2e-49
 Identities = 80/129 (62%), Positives = 106/129 (82%), Gaps = 4/129 (3%)
 Frame = +1

Query: 187 AISLSRKDG--GPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVN 360
           A S + K G  GPG+VGI+FC ECNNMLYPREDK ++VL+Y+CRNC+++++A + C+YVN
Sbjct: 39  APSQNEKPGKSGPGFVGIKFCPECNNMLYPREDKESRVLMYSCRNCEHREVAANPCIYVN 98

Query: 361 KIMHEVDELTHINPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVCTS 540
           K++HE+DELT I  D++ DPTLP+T++H CP C   +AVFFQ QT++AEEEMRLYYVC S
Sbjct: 99  KLVHEIDELTQIVGDIIHDPTLPKTEEHQCPVCGKSKAVFFQAQTKKAEEEMRLYYVCAS 158

Query: 541 --CKHRWTE 561
             C+HRWTE
Sbjct: 159 QDCQHRWTE 167


>AC024214-2|AAF36076.1|  108|Caenorhabditis elegans Hypothetical
           protein Y77E11A.6 protein.
          Length = 108

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
 Frame = +1

Query: 232 IQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHINPDVV 411
           + FC EC  +L  + +   + + ++C  C Y  +        ++I  ++ ++     DV+
Sbjct: 2   LTFCPECGCVL--QIESGEQCMRFSCPACPY--VCPVTQTVTSRIYPKLKDID----DVL 53

Query: 412 SDPTL---PRTKDHMCPKCNHREAVFFQGQTRRAEEEMRLYYVC--TSCKHRWTE 561
             P      +  D  CP C+H  A F Q QTR A+E   ++Y C   +C HRW +
Sbjct: 54  GGPGAWANAQVTDETCPVCSHGRAYFMQLQTRSADEPSTIFYRCADNACAHRWKD 108


>Z81035-6|CAB02739.1|  119|Caenorhabditis elegans Hypothetical
           protein C15H11.8 protein.
          Length = 119

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +1

Query: 304 ACRNCDYKQLADSNCVYVNKIMHEVDELTHINPD-VVSDPTLPRTKDHMCPKCNHREAVF 480
           +C+ C  +         V   + ++ E T  + D + +D +     DH+C KC H +A +
Sbjct: 31  SCKVCSTRWAVKERVDQVVSRVEKIYERTVADTDGIENDESADAVVDHICTKCGHSKASY 90

Query: 481 FQGQTRRAEEEMRLYYVCTSCKHR 552
              QTR A+E   ++Y C  CK +
Sbjct: 91  STMQTRSADEGQTVFYTCLKCKKK 114


>Z54216-1|CAA90943.1|  308|Caenorhabditis elegans Hypothetical
           protein T24H10.1 protein.
          Length = 308

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 448 CPKCNHREAVFFQGQTRRAEEEMRLYYVCTSCKHRW 555
           C KC  +   + Q QTR ++E M  +  C  C +RW
Sbjct: 270 CGKCGKKNCTYTQLQTRSSDEPMTTFVFCLECGNRW 305


>U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical protein
            C28G1.4 protein.
          Length = 1081

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/53 (28%), Positives = 21/53 (39%)
 Frame = +1

Query: 241  CQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKIMHEVDELTHIN 399
            C   NN  +   D++    LY C+ CDY         +     H +D LT  N
Sbjct: 938  CASVNNS-FEHSDRHGWNKLYRCKLCDYSDDTKEVVGFHETKHHNIDHLTLAN 989


>U40413-6|AAK39173.2|  356|Caenorhabditis elegans Hypothetical
           protein C18B2.2 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = +1

Query: 364 IMHEVDELTHINPDVVSDPTLPRTKDHMCPKCNHREAVFFQGQTR 498
           + H +DEL   N DVV    L  T    C   +H    F   +TR
Sbjct: 62  LYHNMDELKAQNSDVVQPRVLKGTAREFCNNTDHCIRPFLNHETR 106


>Z48334-5|CAA88312.1|  424|Caenorhabditis elegans Hypothetical
           protein F10B5.5 protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +3

Query: 471 SSILSRPDETRRRRNEIVLCVYKL*T*MDR--VDRA 572
           +++L++ D  RRR N ++LC   L + +D+  VDRA
Sbjct: 278 NALLTQIDRIRRRDNVLILCTSNLESTLDKALVDRA 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,571,364
Number of Sequences: 27780
Number of extensions: 274940
Number of successful extensions: 758
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)