Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j08
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    27   0.20 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   5.6  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    21   9.8  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 14/65 (21%), Positives = 32/65 (49%)
 Frame = +1

Query: 187 AISLSRKDGGPGYVGIQFCQECNNMLYPREDKNNKVLLYACRNCDYKQLADSNCVYVNKI 366
           A++ S  +GG   + +Q     N ++Y  +DK + +++Y   +  + +L  +   Y  K 
Sbjct: 179 AVNASTGNGGLVSLVVQAMDPVNTIVYMADDKGDALIVYQNSDESFHRLTSNTFDYDPKY 238

Query: 367 MHEVD 381
           +  +D
Sbjct: 239 IKMMD 243


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 465 QRSSILSRPDETRRRR 512
           Q SSI+S PD  R +R
Sbjct: 386 QSSSIVSSPDSARHQR 401


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
 Frame = +1

Query: 241 CQECN------NMLYPREDKNNKVLLYACRNCDY 324
           C++C+      +ML      ++ V  Y C NC Y
Sbjct: 19  CEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCTY 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,184
Number of Sequences: 438
Number of extensions: 3136
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)