Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j07
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po...    25   4.5  
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.5  
SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces pomb...    25   4.5  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    25   5.9  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.9  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    25   5.9  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   7.8  
SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    25   7.8  

>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 7/23 (30%), Positives = 18/23 (78%)
 Frame = -2

Query: 79  KIVGKMYNLSRDQRPPILFSDNL 11
           ++V +++ ++R+Q+P I+F D +
Sbjct: 208 RLVRQLFEMAREQKPSIIFIDEI 230


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 41  LIARQIVHFSYYFCVFYNSYSYLSFTFVVLVVSP--STFLSYN 163
           +++  + H S+     +  +S+LSF  +  ++ P  S FLS N
Sbjct: 165 ILSHSLFHISHLISFHFLFFSFLSFPLLSFILFPCFSLFLSSN 207


>SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = -1

Query: 230 SAISSRGYSGFTLTGGRDQGALHYMTEKLK--ETPLALQK*SSSKNMNYKTHKNSRKNVQ 57
           S +   G S + +   +D  +   MTE  K  E+    +    +KN   KTHK+      
Sbjct: 41  SPLEENGVSTYQMLRSKDTDSAMPMTEAQKHFESVQEQRLLQKAKNERLKTHKDRIDEYN 100

Query: 56  FVARSAAAHF 27
            +  S + HF
Sbjct: 101 RLLESQSEHF 110


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 26  QNGRPLIARQIVHFSYYFCVFYNSYSYLSFTFVVLVVSPSTFLSYNGELLDLAHQ 190
           Q    L +++ +       VF+  Y  L+   VV       FL +N EL++  HQ
Sbjct: 194 QRDSQLTSKRFLRLLCLAAVFFLGYFPLTIFMVVANGKLQQFLPFNHELVEAWHQ 248


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 251 KSVLNESITSLPTNNYDRSATSDSTQ 328
           KS ++ S+T +P++NY R   S + +
Sbjct: 371 KSGIDSSVTGMPSDNYARVVESSTAE 396


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
 Frame = +1

Query: 280 STHKQLRS--------QRHLRFHPGRGNPLYAD 354
           +THK LR         +R LR H  +GNP+Y D
Sbjct: 240 TTHKSLRGPRGAMIFFRRGLRKHDKKGNPIYYD 272


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 376 VNLGARGVLYPAENVFKL 429
           VNLGA+ +L P +N+ KL
Sbjct: 196 VNLGAKLLLVPVQNLIKL 213


>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 225 HIFEGLFWLYPDWWARSRSSPLYDRKVEGD 136
           H  EGL  L  +W     S P+Y    +GD
Sbjct: 216 HDREGLLELTHNWGTEKESGPVYHNGNDGD 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,978,689
Number of Sequences: 5004
Number of extensions: 38493
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)