Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j06
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    29   0.57 
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    26   4.0  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    26   5.3  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    26   5.3  
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo...    25   7.1  
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    25   9.3  

>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = +3

Query: 108 QKLDETHKKSVKADVIILGCSLSGIVAA----HKLKRRFGDSMDIVVLDLAGQTQSYSKY 275
           QK++         D + +  S S IV      HK K  F D  D   +DL  + QS S  
Sbjct: 21  QKIENVTSPIKTLDFVKVKVSSSDIVVKDSIPHKSKNVFDDFDDGYAIDLTEEHQSSSLN 80

Query: 276 NVVFEDVE 299
           N+ ++DVE
Sbjct: 81  NLKWKDVE 88


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 22/55 (40%), Positives = 26/55 (47%)
 Frame = -2

Query: 470 EQLGQPSPDSFRGYYDVWKGHVEFFGIFS*IKPRNILNHLLSGSLKIRLGYDILA 306
           EQ+  P   S R   D     +EFFG  S I   N LNH L  +   R GYD L+
Sbjct: 67  EQMNIPEFISVRNLNDD-SSSIEFFGPASNISFVNQLNHYLRKA--ERNGYDFLS 118


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 287 RRCRKGQPGYHNRAGFSRNR 346
           R C +G+PGY++  G  R+R
Sbjct: 194 RECYEGRPGYNDSNGLIRSR 213


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 9/115 (7%)
 Frame = +3

Query: 90  LNTQMVQKLDETHKKSVKADVIILGCSLSGIVAAHKLKRRFGDSMDIVVLDLAGQTQSYS 269
           +NT +   L  T +K+    VI  G  +S I   +  K +F  + D +   L    Q + 
Sbjct: 15  VNTFLDVVLSRTQRKT--PTVIRSGFKISRIRGFYGRKVKF--TQDTITEKLDSILQEFP 70

Query: 270 KYNVVFEDVEKDSQDIITEPDFQ-------GTAKQMIENVARFY--LAKYAKEFH 407
           K N +      D  +I+ + D          TAK ++ENVAR Y  L KY    +
Sbjct: 71  KLNDI-HPFHADLLNILYDRDHLKIALSQLSTAKHLVENVARDYIRLLKYGDSLY 124


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
 Frame = -3

Query: 568 FWYWLISNLSITLR*SNSWKSLVHST-VLPFW----C--WNSLVNLVLTLSG 434
           F YWLIS  +IT+    S + L   T  + +W    C   + L +LVLTL G
Sbjct: 98  FVYWLISLDNITVFIQKSMEDLFEKTEKIQYWTTLLCTKHSQLFDLVLTLGG 149


>SPCC4B3.18 |||phosphopantothenate-cysteine
           ligase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 351 QMIENVARFYLAKYAKEFHVP 413
           Q+I + A FYLA    +FH+P
Sbjct: 167 QIIASRALFYLAAAVSDFHIP 187


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 512 EVIGTFYSVTVLVLEQLGQPSPDSFRGY 429
           +V+G F+ + + + +Q+  P  DS  GY
Sbjct: 121 KVVGPFHGIPISLKDQVDLPGKDSSIGY 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,117
Number of Sequences: 5004
Number of extensions: 57717
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)