Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2j06
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1312 - 25699811-25699912,25700410-25700548,25700655-257007... 33 0.15
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653... 33 0.19
01_06_0454 - 29506637-29508175 32 0.45
02_05_0129 + 26064518-26065107,26065501-26065522 29 4.2
04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959 28 5.5
08_01_0227 + 1827461-1827674,1827844-1828143,1828272-1828434,182... 28 7.3
03_02_0246 - 6772369-6772808,6773223-6775788 28 7.3
01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502... 28 7.3
>07_03_1312 -
25699811-25699912,25700410-25700548,25700655-25700722,
25700803-25700895,25706303-25706902
Length = 333
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 189 AHKLKRRFGDSMDIVVLDLAGQTQSYSKYNVVFEDVEKDSQDIITEP 329
AH+LKR G+S +VV+ AG + K V ++ + Q+ +TEP
Sbjct: 249 AHRLKRHLGESSRLVVIRNAGHAVNLEKPKDVCRNIIEFFQEGVTEP 295
>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
24665465-24665887,24665960-24666252,24666332-24666605,
24666856-24667358,24667464-24667785,24667875-24668220,
24668339-24668997,24669524-24669625,24669656-24670052,
24670155-24670270,24670360-24670386
Length = 1704
Score = 33.1 bits (72), Expect = 0.19
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Frame = +3
Query: 81 ILILNTQMVQKLDETHKKSVKADVIILGCSLSGIVAAHKLK-RRFGDSMDIVVLDLAG-Q 254
+L+L Q + KL E H+K + +D I + + +A H + + M++ + +
Sbjct: 1485 LLLLVVQGIIKLYEEHRKYLSSDHINILLEMISAIATHASEFHKACSLMEVSEPAIVHFE 1544
Query: 255 TQSYSKYNVVFEDVEKDSQDIITEPDFQGTAKQMIENVARFYL 383
+SY Y + + + +D + E D + ++ E + R YL
Sbjct: 1545 NESYQTYLKLLQALFRDYPSMSEEMDIESQILRVCEKILRIYL 1587
>01_06_0454 - 29506637-29508175
Length = 512
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 141 KADVIILGCSLSGIVAAHKLKRRFGDSMDIVVLD 242
K V+++G +SG+ AAH+L GD ++ V++
Sbjct: 5 KPRVVVVGAGISGLAAAHRLCGAGGDRFEVAVVE 38
>02_05_0129 + 26064518-26065107,26065501-26065522
Length = 203
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +3
Query: 141 KADVIILGCSLSGIVAAHKLKRRFGDSMDIVVLD 242
K V+++G +S + AAH+L GD ++ V++
Sbjct: 5 KPRVVVVGAGISCLTAAHRLCGAGGDKFEVAVVE 38
>04_03_0550 + 17054155-17054182,17054438-17054503,17054504-17056959
Length = 849
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 365 ILNHLLSGSLKIRLGYDILAVLFYIFEDNIILGIALCLS 249
+ H+L+GSL + L AVL +I I +G+A LS
Sbjct: 622 VYEHMLNGSLDVHLFQSHAAVLNWITMHQIAIGVARGLS 660
>08_01_0227 +
1827461-1827674,1827844-1828143,1828272-1828434,
1828453-1828489,1829207-1829737,1830677-1830829
Length = 465
Score = 27.9 bits (59), Expect = 7.3
Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 4/153 (2%)
Frame = +3
Query: 117 DETHKKSVKADVIILGCSLSGIVAAHKLKRRFGDSMDIVVLDLAGQTQSYSKYNVVFEDV 296
DE+ + + D + G +L IVA + + + + VLD+ G S+ + +
Sbjct: 3 DESERSGMVIDDVGGGLNLPIIVAGKRKRELTWEEKALTVLDIVG-----SQQHPACQPA 57
Query: 297 EKDSQDIITEPDFQGTAK-QMIENVARFYLAKYAKEFHVPLPDVIIAPERVRTRLTKLFQ 473
E+D I +E D+ A Q E+ + F + K + P + ++ + L +
Sbjct: 58 ERDCSLIDSEKDYSSMAGCQAGEHASIFGIDKNGDDSDEP----CAKDDAKQSDVAPLKE 113
Query: 474 HQN---GNTVECTNDFHEFDYLSVMERFEINQY 563
+N + E T D + L+++ R EI +Y
Sbjct: 114 EENWELDSEPELTWDEKVVEVLNIVRRREITEY 146
>03_02_0246 - 6772369-6772808,6773223-6775788
Length = 1001
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 123 THKKSVKADVIILGCSLSGIVAAHKLKRRFGDSMDIV 233
T K K+DV G L ++A K FGD +DIV
Sbjct: 860 TLKVDEKSDVYSFGVVLLELIAGRKPVGEFGDGVDIV 896
>01_01_0660 +
5029070-5029177,5029303-5029398,5029494-5029556,
5029836-5029913,5030446-5030614,5030797-5031180,
5031959-5032042,5032143-5032288,5032810-5033070,
5033147-5033328,5033421-5033586,5033650-5033703,
5034702-5034965,5035088-5035303,5035388-5035540,
5035630-5035827
Length = 873
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/71 (25%), Positives = 37/71 (52%)
Frame = +3
Query: 411 PLPDVIIAPERVRTRLTKLFQHQNGNTVECTNDFHEFDYLSVMERFEINQYQNMLDQSMK 590
PL + + VR+R L +H+NG+ E + Y++ + + Q + M+D++MK
Sbjct: 706 PLQPLQSVDDNVRSR--GLSEHRNGHNDELDS------YITSFVQMSLAQAKQMVDEAMK 757
Query: 591 DLFQRHKVDLQ 623
++ + K L+
Sbjct: 758 EISENGKSSLE 768
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,903,199
Number of Sequences: 37544
Number of extensions: 352805
Number of successful extensions: 831
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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