Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2j06
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M22751-1|AAA28106.1|  211|Caenorhabditis elegans protein ( C.ele...    30   1.2  
L15201-2|AAA27945.2|  200|Caenorhabditis elegans Male abnormal p...    30   1.2  
AF277990-1|AAG00458.1|  200|Caenorhabditis elegans MAB-5 protein.      30   1.2  
AF067936-2|AAC19213.1|  527|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z46266-5|CAA86412.1|  375|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z77667-3|CAB01237.1|  527|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>M22751-1|AAA28106.1|  211|Caenorhabditis elegans protein (
           C.elegans DNA-bindingprotein (mab5) mRNA, 3' end. ).
          Length = 211

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 438 ERVRTRLTKLFQHQNGNTVECTNDFHEFDYLSVMERFEINQYQNMLDQSMKDLFQRHKVD 617
           E  RTR T    +    T+E   +FH   YL+   R EI++  ++ ++ +K  FQ  ++ 
Sbjct: 127 ESKRTRQT----YSRSQTLELEKEFHYHKYLTRKRRQEISETLHLTERQVKIWFQNRRMK 182

Query: 618 LQAE 629
            + E
Sbjct: 183 HKKE 186


>L15201-2|AAA27945.2|  200|Caenorhabditis elegans Male abnormal
           protein 5 protein.
          Length = 200

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 438 ERVRTRLTKLFQHQNGNTVECTNDFHEFDYLSVMERFEINQYQNMLDQSMKDLFQRHKVD 617
           E  RTR T    +    T+E   +FH   YL+   R EI++  ++ ++ +K  FQ  ++ 
Sbjct: 116 ESKRTRQT----YSRSQTLELEKEFHYHKYLTRKRRQEISETLHLTERQVKIWFQNRRMK 171

Query: 618 LQAE 629
            + E
Sbjct: 172 HKKE 175


>AF277990-1|AAG00458.1|  200|Caenorhabditis elegans MAB-5 protein.
          Length = 200

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 438 ERVRTRLTKLFQHQNGNTVECTNDFHEFDYLSVMERFEINQYQNMLDQSMKDLFQRHKVD 617
           E  RTR T    +    T+E   +FH   YL+   R EI++  ++ ++ +K  FQ  ++ 
Sbjct: 116 ESKRTRQT----YSRSQTLELEKEFHYHKYLTRKRRQEISETLHLTERQVKIWFQNRRMK 171

Query: 618 LQAE 629
            + E
Sbjct: 172 HKKE 175


>AF067936-2|AAC19213.1|  527|Caenorhabditis elegans Hypothetical
           protein C24G6.6 protein.
          Length = 527

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 105 VQKLDETHKKSVKADVIILGCSLSGIVAAHKLKRRFGDSMDI 230
           VQK  E    S+K  + I+G  +SG+  A +L     D  DI
Sbjct: 19  VQKESEKGDSSIKPSIAIVGAGISGLSTARRLIELGIDDFDI 60


>Z46266-5|CAA86412.1|  375|Caenorhabditis elegans Hypothetical
           protein C07B5.5 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +3

Query: 357 IENVARFYLAKYAK--EFHVPLPDVIIAPERVRTRLTKLFQHQNGNTVECTNDFHEFDYL 530
           +E +A +    +AK  EF+  L D ++AP      + + ++  +   ++C   +H  D L
Sbjct: 246 LETMAGYSFTNFAKSKEFNADLYDTLVAPTLKTDLVVETWRRGSEIPLDCKLTYHANDAL 305

Query: 531 SV 536
           S+
Sbjct: 306 SI 307


>Z77667-3|CAB01237.1|  527|Caenorhabditis elegans Hypothetical
           protein M04B2.4 protein.
          Length = 527

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 141 KADVIILGCSLSGIVAAHKLKRRFGD-SMDIVVLD 242
           +A+++I+G  LSG   A  LK RF D    +VV++
Sbjct: 93  RAEIVIIGGGLSGSSTAFWLKERFRDEDFKVVVVE 127


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical
           protein F40H6.5 protein.
          Length = 1288

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 527 IVELVEVIGTFYSVTVLVLEQLGQPSPDSFRGYY 426
           IV + + I T  S T+L+  Q    SP    GYY
Sbjct: 301 IVMIPDGISTISSTTILLTSQFATSSPSQIVGYY 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,919,379
Number of Sequences: 27780
Number of extensions: 319835
Number of successful extensions: 748
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)